Handling graph data is one of the most difficult tasks. Traditional techniques, such as those based on geometry and matrix factorization, rely on assumptions about the data relations that become inadequate when handling large and complex graph data. On the other hand, deep learning approaches demonstrate promising results in handling large graph data, but they often fall short of providing interpretable explanations. To equip the graph processing with both high accuracy and explainability, we introduce a novel approach that harnesses the power of a large language model (LLM), enhanced by an uncertainty-aware module to provide a confidence score on the generated answer. We experiment with our approach on two graph processing tasks: few-shot knowledge graph completion and graph classification. Our results demonstrate that through parameter efficient fine-tuning, the LLM surpasses state-of-the-art algorithms by a substantial margin across ten diverse benchmark datasets. Moreover, to address the challenge of explainability, we propose an uncertainty estimation based on perturbation, along with a calibration scheme to quantify the confidence scores of the generated answers. Our confidence measure achieves an AUC of 0.8 or higher on seven out of the ten datasets in predicting the correctness of the answer generated by LLM.

Electronic health records (EHRs) serve as a digital repository storing comprehensive medical information about patients. Representation learning for EHRs plays a crucial role in healthcare applications. In this paper, we propose a Multimodal Heterogeneous Graph-enhanced Representation Learning, denoted as MHGRL, aimed at learning effective EHR representations. To address the challenge posed by data insufficiency of EHRs, MHGRL utilizes a multimodal heterogeneous graph to model an EHR. Specifically, we construct a heterogeneous graph for each EHR and enrich it by incorporating multimodal information with medical ontology and textual notes. With the integration of pre-trained model, graph neural network, and attention mechanism, MHGRL effectively incorporates both node attributes and structural information across a multimodal heterogeneous graph. Moreover, we employ contrastive learning to ensure the consistency of representations for similar EHRs and improve the model robustness. The experimental results show that MHGRL outperforms all baselines on two real clinical datasets in downstream tasks, including EHR clustering and disease prediction. The code is available at https://github.com/emmali808/MHGRL.

The large language models have achieved superior performance on various natural language tasks. One major drawback of such approaches is they are resource-intensive in fine-tuning new datasets. Soft-prompt tuning presents a resource-efficient solution to fine-tune the pre-trained language models (PLMs) while keeping their weight frozen. Existing soft prompt methods mainly focus on designing the input-independent prompts that steer the model to fit the domain of the new dataset. Those methods often ignore the fine-grained information about the task and context of the text. In this paper, we propose a multi-level prompt tuning (MPrompt) method for machine reading comprehension. It utilizes prompts at task-specific, domain-specific, and context-specific levels to enhance the comprehension of input semantics at different granularities. We also propose an independence constraint to steer each domain-specific prompt to focus on information within its domain to avoid redundancy. Moreover, we present a prompt generator that incorporates context-related knowledge in the prompt generation to enhance contextual relevancy. We conducted extensive experiments on 12 benchmarks of various QA formats and achieved an average improvement of 1.94% over the state-of-the-art methods.

Since ChatGPT released its API for public use, the number of applications built on top of commercial large language models (LLMs) increase exponentially. One popular usage of such models is leveraging its in-context learning ability and generating responses given user queries leveraging knowledge obtained by retrieval augmentation. One problem of deploying commercial retrieval-augmented LLMs is the cost due to the additionally retrieved context that largely increases the input token size of the LLMs. To mitigate this, we propose a token compression scheme that includes two methods: summarization compression and semantic compression. The first method applies a T5-based model that is fine-tuned by datasets generated using self-instruct containing samples with varying lengths and reduce token size by doing summarization. The second method further compresses the token size by removing words with lower impact on the semantic. In order to adequately evaluate the effectiveness of the proposed methods, we propose and utilize a dataset called Food-Recommendation DB (FRDB) focusing on food recommendation for women around pregnancy period or infants. Our summarization compression can reduce 65% of the retrieval token size with further 0.3% improvement on the accuracy; semantic compression provides a more flexible way to trade-off the token size with performance, for which we can reduce the token size by 20% with only 1.6% of accuracy drop.