Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor 2020-11 Association for Computational Linguistics Online text conference publication clinicalnlp-2020-clinical 10.18653/v1/2020.clinicalnlp-1.0 https://aclanthology.org/2020.clinicalnlp-1.0/ Various Approaches for Predicting Stroke Prognosis using Magnetic Resonance Imaging Text Records Tak-Sung Heo author Chulho Kim author Jeong-Myeong Choi author Yeong-Seok Jeong author Yu-Seop Kim author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication heo-etal-2020-various 10.18653/v1/2020.clinicalnlp-1.1 https://aclanthology.org/2020.clinicalnlp-1.1/ 2020-11 1 6 Multiple Sclerosis Severity Classification From Clinical Text Alister D’Costa author Stefan Denkovski author Michal Malyska author Sae Young Moon author Brandon Rufino author Zhen Yang author Taylor Killian author Marzyeh Ghassemi author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication dcosta-etal-2020-multiple 10.18653/v1/2020.clinicalnlp-1.2 https://aclanthology.org/2020.clinicalnlp-1.2/ 2020-11 7 23 BERT-XML: Large Scale Automated ICD Coding Using BERT Pretraining Zachariah Zhang author Jingshu Liu author Narges Razavian author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication zhang-etal-2020-bert 10.18653/v1/2020.clinicalnlp-1.3 https://aclanthology.org/2020.clinicalnlp-1.3/ 2020-11 24 34 Incorporating Risk Factor Embeddings in Pre-trained Transformers Improves Sentiment Prediction in Psychiatric Discharge Summaries Xiyu Ding author Mei-Hua Hall author Timothy Miller author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication ding-etal-2020-incorporating 10.18653/v1/2020.clinicalnlp-1.4 https://aclanthology.org/2020.clinicalnlp-1.4/ 2020-11 35 40 Information Extraction from Swedish Medical Prescriptions with Sig-Transformer Encoder John Pougué Biyong author Bo Wang author Terry Lyons author Alejo Nevado-Holgado author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication pougue-biyong-etal-2020-information 10.18653/v1/2020.clinicalnlp-1.5 https://aclanthology.org/2020.clinicalnlp-1.5/ 2020-11 41 54 Evaluation of Transfer Learning for Adverse Drug Event (ADE) and Medication Entity Extraction Sankaran Narayanan author Kaivalya Mannam author Sreeranga P Rajan author P Venkat Rangan author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication narayanan-etal-2020-evaluation 10.18653/v1/2020.clinicalnlp-1.6 https://aclanthology.org/2020.clinicalnlp-1.6/ 2020-11 55 64 BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition Elisa Terumi Rubel Schneider author João Vitor Andrioli de Souza author Julien Knafou author Lucas Emanuel Silva e Oliveira author Jenny Copara author Yohan Bonescki Gumiel author Lucas Ferro Antunes de Oliveira author Emerson Cabrera Paraiso author Douglas Teodoro author Cláudia Maria Cabral Moro Barra author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication schneider-etal-2020-biobertpt 10.18653/v1/2020.clinicalnlp-1.7 https://aclanthology.org/2020.clinicalnlp-1.7/ 2020-11 65 72 Dilated Convolutional Attention Network for Medical Code Assignment from Clinical Text Shaoxiong Ji author Erik Cambria author Pekka Marttinen author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication ji-etal-2020-dilated 10.18653/v1/2020.clinicalnlp-1.8 https://aclanthology.org/2020.clinicalnlp-1.8/ 2020-11 73 78 Classification of Syncope Cases in Norwegian Medical Records Ildiko Pilan author Pål H Brekke author Fredrik A Dahl author Tore Gundersen author Haldor Husby author Øystein Nytrø author Lilja Øvrelid author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication pilan-etal-2020-classification 10.18653/v1/2020.clinicalnlp-1.9 https://aclanthology.org/2020.clinicalnlp-1.9/ 2020-11 79 84 Comparison of Machine Learning Methods for Multi-label Classification of Nursing Education and Licensure Exam Questions John Langton author Krishna Srihasam author Junlin Jiang author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication langton-etal-2020-comparison 10.18653/v1/2020.clinicalnlp-1.10 https://aclanthology.org/2020.clinicalnlp-1.10/ 2020-11 85 93 Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation Kexin Huang author Abhishek Singh author Sitong Chen author Edward Moseley author Chih-Ying Deng author Naomi George author Charolotta Lindvall author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication huang-etal-2020-clinical 10.18653/v1/2020.clinicalnlp-1.11 https://aclanthology.org/2020.clinicalnlp-1.11/ 2020-11 94 100 Automatic recognition of abdominal lymph nodes from clinical text Yifan Peng author Sungwon Lee author Daniel C Elton author Thomas Shen author Yu-xing Tang author Qingyu Chen author Shuai Wang author Yingying Zhu author Ronald Summers author Zhiyong Lu author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication peng-etal-2020-automatic 10.18653/v1/2020.clinicalnlp-1.12 https://aclanthology.org/2020.clinicalnlp-1.12/ 2020-11 101 110 How You Ask Matters: The Effect of Paraphrastic Questions to BERT Performance on a Clinical SQuAD Dataset Sungrim (Riea) Moon author Jungwei Fan author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication moon-fan-2020-ask 10.18653/v1/2020.clinicalnlp-1.13 https://aclanthology.org/2020.clinicalnlp-1.13/ 2020-11 111 116 Relative and Incomplete Time Expression Anchoring for Clinical Text Louise Dupuis author Nicol Bergou author Hegler Tissot author Sumithra Velupillai author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication dupuis-etal-2020-relative 10.18653/v1/2020.clinicalnlp-1.14 https://aclanthology.org/2020.clinicalnlp-1.14/ 2020-11 117 129 MeDAL: Medical Abbreviation Disambiguation Dataset for Natural Language Understanding Pretraining Zhi Wen author Xing Han Lu author Siva Reddy author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication wen-etal-2020-medal 10.18653/v1/2020.clinicalnlp-1.15 https://aclanthology.org/2020.clinicalnlp-1.15/ 2020-11 130 135 Knowledge Grounded Conversational Symptom Detection with Graph Memory Networks Hongyin Luo author Shang-Wen Li author James Glass author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication luo-etal-2020-knowledge 10.18653/v1/2020.clinicalnlp-1.16 https://aclanthology.org/2020.clinicalnlp-1.16/ 2020-11 136 145 Pretrained Language Models for Biomedical and Clinical Tasks: Understanding and Extending the State-of-the-Art Patrick Lewis author Myle Ott author Jingfei Du author Veselin Stoyanov author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication lewis-etal-2020-pretrained 10.18653/v1/2020.clinicalnlp-1.17 https://aclanthology.org/2020.clinicalnlp-1.17/ 2020-11 146 157 Assessment of DistilBERT performance on Named Entity Recognition task for the detection of Protected Health Information and medical concepts Macarious Abadeer author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication abadeer-2020-assessment 10.18653/v1/2020.clinicalnlp-1.18 https://aclanthology.org/2020.clinicalnlp-1.18/ 2020-11 158 167 Distinguishing between Dementia with Lewy bodies (DLB) and Alzheimer’s Disease (AD) using Mental Health Records: a Classification Approach Zixu Wang author Julia Ive author Sinead Moylett author Christoph Mueller author Rudolf Cardinal author Sumithra Velupillai author John O’Brien author Robert Stewart author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication wang-etal-2020-distinguishing 10.18653/v1/2020.clinicalnlp-1.19 https://aclanthology.org/2020.clinicalnlp-1.19/ 2020-11 168 177 Weakly Supervised Medication Regimen Extraction from Medical Conversations Dhruvesh Patel author Sandeep Konam author Sai Prabhakar author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication patel-etal-2020-weakly 10.18653/v1/2020.clinicalnlp-1.20 https://aclanthology.org/2020.clinicalnlp-1.20/ 2020-11 178 193 Extracting Relations between Radiotherapy Treatment Details Danielle Bitterman author Timothy Miller author David Harris author Chen Lin author Sean Finan author Jeremy Warner author Raymond Mak author Guergana Savova author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication bitterman-etal-2020-extracting 10.18653/v1/2020.clinicalnlp-1.21 https://aclanthology.org/2020.clinicalnlp-1.21/ 2020-11 194 200 Cancer Registry Information Extraction via Transfer Learning Yan-Jie Lin author Hong-Jie Dai author You-Chen Zhang author Chung-Yang Wu author Yu-Cheng Chang author Pin-Jou Lu author Chih-Jen Huang author Yu-Tsang Wang author Hui-Min Hsieh author Kun-San Chao author Tsang-Wu Liu author I-Shou Chang author Yi-Hsin Connie Yang author Ti-Hao Wang author Ko-Jiunn Liu author Li-Tzong Chen author Sheau-Fang Yang author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication lin-etal-2020-cancer 10.18653/v1/2020.clinicalnlp-1.22 https://aclanthology.org/2020.clinicalnlp-1.22/ 2020-11 201 208 PHICON: Improving Generalization of Clinical Text De-identification Models via Data Augmentation Xiang Yue author Shuang Zhou author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication yue-zhou-2020-phicon 10.18653/v1/2020.clinicalnlp-1.23 https://aclanthology.org/2020.clinicalnlp-1.23/ 2020-11 209 214 Where’s the Question? A Multi-channel Deep Convolutional Neural Network for Question Identification in Textual Data George Michalopoulos author Helen Chen author Alexander Wong author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication michalopoulos-etal-2020-wheres 10.18653/v1/2020.clinicalnlp-1.24 https://aclanthology.org/2020.clinicalnlp-1.24/ 2020-11 215 226 Learning from Unlabelled Data for Clinical Semantic Textual Similarity Yuxia Wang author Karin Verspoor author Timothy Baldwin author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication wang-etal-2020-learning 10.18653/v1/2020.clinicalnlp-1.25 https://aclanthology.org/2020.clinicalnlp-1.25/ 2020-11 227 233 Joint Learning with Pre-trained Transformer on Named Entity Recognition and Relation Extraction Tasks for Clinical Analytics Miao Chen author Ganhui Lan author Fang Du author Victor Lobanov author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication chen-etal-2020-joint 10.18653/v1/2020.clinicalnlp-1.26 https://aclanthology.org/2020.clinicalnlp-1.26/ 2020-11 234 242 Extracting Semantic Aspects for Structured Representation of Clinical Trial Eligibility Criteria Tirthankar Dasgupta author Ishani Mondal author Abir Naskar author Lipika Dey author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication dasgupta-etal-2020-extracting 10.18653/v1/2020.clinicalnlp-1.27 https://aclanthology.org/2020.clinicalnlp-1.27/ 2020-11 243 248 An Ensemble Approach for Automatic Structuring of Radiology Reports Morteza Pourreza Shahri author Amir Tahmasebi author Bingyang Ye author Henghui Zhu author Javed Aslam author Timothy Ferris author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication pourreza-shahri-etal-2020-ensemble 10.18653/v1/2020.clinicalnlp-1.28 https://aclanthology.org/2020.clinicalnlp-1.28/ 2020-11 249 258 Utilizing Multimodal Feature Consistency to Detect Adversarial Examples on Clinical Summaries Wenjie Wang author Youngja Park author Taesung Lee author Ian Molloy author Pengfei Tang author Li Xiong author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication wang-etal-2020-utilizing 10.18653/v1/2020.clinicalnlp-1.29 https://aclanthology.org/2020.clinicalnlp-1.29/ 2020-11 259 268 Advancing Seq2seq with Joint Paraphrase Learning So Yeon Min author Preethi Raghavan author Peter Szolovits author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication min-etal-2020-advancing 10.18653/v1/2020.clinicalnlp-1.30 https://aclanthology.org/2020.clinicalnlp-1.30/ 2020-11 269 279 On the diminishing return of labeling clinical reports Jean-Baptiste Lamare author Oloruntobiloba Olatunji author Li Yao author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication lamare-etal-2020-diminishing 10.18653/v1/2020.clinicalnlp-1.31 https://aclanthology.org/2020.clinicalnlp-1.31/ 2020-11 280 290 The Chilean Waiting List Corpus: a new resource for clinical Named Entity Recognition in Spanish Pablo Báez author Fabián Villena author Matías Rojas author Manuel Durán author Jocelyn Dunstan author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication baez-etal-2020-chilean 10.18653/v1/2020.clinicalnlp-1.32 https://aclanthology.org/2020.clinicalnlp-1.32/ 2020-11 291 300 Exploring Text Specific and Blackbox Fairness Algorithms in Multimodal Clinical NLP John Chen author Ian Berlot-Attwell author Xindi Wang author Safwan Hossain author Frank Rudzicz author 2020-11 text Proceedings of the 3rd Clinical Natural Language Processing Workshop Anna Rumshisky editor Kirk Roberts editor Steven Bethard editor Tristan Naumann editor Association for Computational Linguistics Online conference publication chen-etal-2020-exploring 10.18653/v1/2020.clinicalnlp-1.33 https://aclanthology.org/2020.clinicalnlp-1.33/ 2020-11 301 312