Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor 2007-06 Association for Computational Linguistics Prague, Czech Republic text conference publication ws-2007-biological https://aclanthology.org/W07-1000/ Syntactic complexity measures for detecting Mild Cognitive Impairment Brian Roark author Margaret Mitchell author Kristy Hollingshead author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication roark-etal-2007-syntactic https://aclanthology.org/W07-1001/ 2007-06 1 8 Determining the Syntactic Structure of Medical Terms in Clinical Notes Bridget McInnes author Ted Pedersen author Serguei Pakhomov author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication mcinnes-etal-2007-determining https://aclanthology.org/W07-1002/ 2007-06 9 16 The Role of Roles in Classifying Annotated Biomedical Text Son Doan author Ai Kawazoe author Nigel Collier author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication doan-etal-2007-role https://aclanthology.org/W07-1003/ 2007-06 17 24 On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA Sampo Pyysalo author Filip Ginter author Veronika Laippala author Katri Haverinen author Juho Heimonen author Tapio Salakoski author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication pyysalo-etal-2007-unification https://aclanthology.org/W07-1004/ 2007-06 25 32 An Unsupervised Method for Extracting Domain-specific Affixes in Biological Literature Haibin Liu author Christian Blouin author Vlado Kešelj author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication liu-etal-2007-unsupervised https://aclanthology.org/W07-1005/ 2007-06 33 40 Combining multiple evidence for gene symbol disambiguation Hua Xu author Jung-Wei Fan author Carol Friedman author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication xu-etal-2007-combining https://aclanthology.org/W07-1006/ 2007-06 41 48 Mining a Lexicon of Technical Terms and Lay Equivalents Noemie Elhadad author Komal Sutaria author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication elhadad-sutaria-2007-mining https://aclanthology.org/W07-1007/ 2007-06 49 56 Annotation of Chemical Named Entities Peter Corbett author Colin Batchelor author Simone Teufel author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication corbett-etal-2007-annotation https://aclanthology.org/W07-1008/ 2007-06 57 64 Recognising Nested Named Entities in Biomedical Text Beatrice Alex author Barry Haddow author Claire Grover author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication alex-etal-2007-recognising https://aclanthology.org/W07-1009/ 2007-06 65 72 Exploring the Efficacy of Caption Search for Bioscience Journal Search Interfaces Marti Hearst author Anna Divoli author Ye Jerry author Michael Wooldridge author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication hearst-etal-2007-exploring https://aclanthology.org/W07-1010/ 2007-06 73 80 ConText: An Algorithm for Identifying Contextual Features from Clinical Text Wendy Chapman author John Dowling author David Chu author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication chapman-etal-2007-context https://aclanthology.org/W07-1011/ 2007-06 81 88 BioNoculars: Extracting Protein-Protein Interactions from Biomedical Text Amgad Madkour author Kareem Darwish author Hany Hassan author Ahmed Hassan author Ossama Emam author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication madkour-etal-2007-bionoculars https://aclanthology.org/W07-1012/ 2007-06 89 96 A shared task involving multi-label classification of clinical free text John P Pestian author Chris Brew author Pawel Matykiewicz author D J Hovermale author Neil Johnson author K Bretonnel Cohen author Wlodzislaw Duch author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication pestian-etal-2007-shared https://aclanthology.org/W07-1013/ 2007-06 97 104 From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches Alan R Aronson author Olivier Bodenreider author Dina Demner-Fushman author Kin Wah Fung author Vivian K Lee author James G Mork author Aurélie Névéol author Lee Peters author Willie J Rogers author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication aronson-etal-2007-indexing https://aclanthology.org/W07-1014/ 2007-06 105 112 Automatically Restructuring Practice Guidelines using the GEM DTD Amanda Bouffier author Thierry Poibeau author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication bouffier-poibeau-2007-automatically https://aclanthology.org/W07-1015/ 2007-06 113 120 A Study of Structured Clinical Abstracts and the Semantic Classification of Sentences Grace Chung author Enrico Coiera author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication chung-coiera-2007-study https://aclanthology.org/W07-1016/ 2007-06 121 128 Automatic Code Assignment to Medical Text Koby Crammer author Mark Dredze author Kuzman Ganchev author Partha Pratim Talukdar author Steven Carroll author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication crammer-etal-2007-automatic https://aclanthology.org/W07-1017/ 2007-06 129 136 Interpreting comparative constructions in biomedical text Marcelo Fiszman author Dina Demner-Fushman author Francois M Lang author Philip Goetz author Thomas C Rindflesch author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication fiszman-etal-2007-interpreting https://aclanthology.org/W07-1018/ 2007-06 137 144 The Extraction of Enriched Protein-Protein Interactions from Biomedical Text Barry Haddow author Michael Matthews author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication haddow-matthews-2007-extraction https://aclanthology.org/W07-1019/ 2007-06 145 152 What’s in a gene name? Automated refinement of gene name dictionaries Jörg Hakenberg author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication hakenberg-2007-whats https://aclanthology.org/W07-1020/ 2007-06 153 160 Exploring the Use of NLP in the Disclosure of Electronic Patient Records David Hardcastle author Catalina Hallett author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication hardcastle-hallett-2007-exploring https://aclanthology.org/W07-1021/ 2007-06 161 162 BaseNPs that contain gene names: domain specificity and genericity Ian Lewin author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication lewin-2007-basenps https://aclanthology.org/W07-1022/ 2007-06 163 170 Challenges for extracting biomedical knowledge from full text Tara McIntosh author James R Curran author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication mcintosh-curran-2007-challenges https://aclanthology.org/W07-1023/ 2007-06 171 178 Adaptation of POS Tagging for Multiple BioMedical Domains John E Miller author Manabu Torii author K Vijay-Shanker author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication miller-etal-2007-adaptation https://aclanthology.org/W07-1024/ 2007-06 179 180 Information Extraction from Patients’ Free Form Documentation Agnieszka Mykowiecka author Malgorzata Marciniak author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication mykowiecka-marciniak-2007-information https://aclanthology.org/W07-1025/ 2007-06 181 182 Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations Aurélie Névéol author James G Mork author Alan R Aronson author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication neveol-etal-2007-automatic https://aclanthology.org/W07-1026/ 2007-06 183 190 Developing Feature Types for Classifying Clinical Notes Jon Patrick author Yitao Zhang author Yefeng Wang author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication patrick-etal-2007-developing https://aclanthology.org/W07-1027/ 2007-06 191 192 Quantitative Data on Referring Expressions in Biomedical Abstracts Michael Poprat author Udo Hahn author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication poprat-hahn-2007-quantitative https://aclanthology.org/W07-1028/ 2007-06 193 194 Discovering contradicting protein-protein interactions in text Olivia Sanchez author Massimo Poesio author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication sanchez-poesio-2007-discovering https://aclanthology.org/W07-1029/ 2007-06 195 196 Marking time in developmental biology Gail Sinclair author Bonnie Webber author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication sinclair-webber-2007-marking https://aclanthology.org/W07-1030/ 2007-06 197 198 Evaluating and combining and biomedical named entity recognition systems Andreas Vlachos author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication vlachos-2007-evaluating https://aclanthology.org/W07-1031/ 2007-06 199 200 Unsupervised Learning of the Morpho-Semantic Relationship in MEDLINE W John Wilbur author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication wilbur-2007-unsupervised https://aclanthology.org/W07-1032/ 2007-06 201 208 Reranking for Biomedical Named-Entity Recognition Kazuhiro Yoshida author Jun’ichi Tsujii author 2007-06 text Biological, translational, and clinical language processing K Bretonnel Cohen editor Dina Demner-Fushman editor Carol Friedman editor Lynette Hirschman editor John Pestian editor Association for Computational Linguistics Prague, Czech Republic conference publication yoshida-tsujii-2007-reranking https://aclanthology.org/W07-1033/ 2007-06 209 216