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    <abstract>We present a manually annotated new corpus, Species-Species Interaction (SSI), for extracting meaningful binary relations between species, in biomedical texts, at sentence level, with a focus on the gut microbiota. The corpus leverages PubTator to annotate species in full-text articles after evaluating different NER species taggers. Our first results are promising for extracting relations between species using BERT and its biomedical variants.</abstract>
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%0 Conference Proceedings
%T Building a Corpus for Biomedical Relation Extraction of Species Mentions
%A El Khettari, Oumaima
%A Quiniou, Solen
%A Chaffron, Samuel
%Y Demner-fushman, Dina
%Y Ananiadou, Sophia
%Y Cohen, Kevin
%S The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks
%D 2023
%8 July
%I Association for Computational Linguistics
%C Toronto, Canada
%F el-khettari-etal-2023-building
%X We present a manually annotated new corpus, Species-Species Interaction (SSI), for extracting meaningful binary relations between species, in biomedical texts, at sentence level, with a focus on the gut microbiota. The corpus leverages PubTator to annotate species in full-text articles after evaluating different NER species taggers. Our first results are promising for extracting relations between species using BERT and its biomedical variants.
%R 10.18653/v1/2023.bionlp-1.21
%U https://aclanthology.org/2023.bionlp-1.21
%U https://doi.org/10.18653/v1/2023.bionlp-1.21
%P 248-254

Markdown (Informal)

[Building a Corpus for Biomedical Relation Extraction of Species Mentions](https://aclanthology.org/2023.bionlp-1.21) (El Khettari et al., BioNLP 2023)

• Building a Corpus for Biomedical Relation Extraction of Species Mentions (El Khettari et al., BioNLP 2023)

ACL

• Oumaima El Khettari, Solen Quiniou, and Samuel Chaffron. 2023. Building a Corpus for Biomedical Relation Extraction of Species Mentions. In The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, pages 248–254, Toronto, Canada. Association for Computational Linguistics.