@inproceedings{chaturvedi-etal-2025-temporal,
title = "Temporal Relation Extraction in Clinical Texts: A Span-based Graph Transformer Approach",
author = "Chaturvedi, Rochana and
Baghershahi, Peyman and
Medya, Sourav and
Di Eugenio, Barbara",
editor = "Che, Wanxiang and
Nabende, Joyce and
Shutova, Ekaterina and
Pilehvar, Mohammad Taher",
booktitle = "Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)",
month = jul,
year = "2025",
address = "Vienna, Austria",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2025.acl-long.1251/",
doi = "10.18653/v1/2025.acl-long.1251",
pages = "25765--25788",
ISBN = "979-8-89176-251-0",
abstract = "Temporal information extraction from unstructured text is essential for contextualizing events and deriving actionable insights, particularly in the medical domain. We address the task of extracting clinical events and their temporal relations using the well-studied I2B2 2012 Temporal Relations Challenge corpus. This task is inherently challenging due to complex clinical language, long documents, and sparse annotations. We introduce GraphTREx, a novel method integrating span-based entity-relation extraction, clinical large pre-trained language models (LPLMs), and Heterogeneous Graph Transformers (HGT) to capture local and global dependencies. Our HGT component facilitates information propagation across the document through innovative global landmarks that bridge distant entities and improves the state-of-the-art with 5.5{\%} improvement in the tempeval F1 score over the previous best and up to 8.9{\%} improvement on long-range relations, which presents a formidable challenge. We further demonstrate generalizability by establishing a strong baseline on the E3C corpus. Not only does this work advance temporal information extraction, but also lays the groundwork for improved diagnostic and prognostic models through enhanced temporal reasoning."
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<abstract>Temporal information extraction from unstructured text is essential for contextualizing events and deriving actionable insights, particularly in the medical domain. We address the task of extracting clinical events and their temporal relations using the well-studied I2B2 2012 Temporal Relations Challenge corpus. This task is inherently challenging due to complex clinical language, long documents, and sparse annotations. We introduce GraphTREx, a novel method integrating span-based entity-relation extraction, clinical large pre-trained language models (LPLMs), and Heterogeneous Graph Transformers (HGT) to capture local and global dependencies. Our HGT component facilitates information propagation across the document through innovative global landmarks that bridge distant entities and improves the state-of-the-art with 5.5% improvement in the tempeval F1 score over the previous best and up to 8.9% improvement on long-range relations, which presents a formidable challenge. We further demonstrate generalizability by establishing a strong baseline on the E3C corpus. Not only does this work advance temporal information extraction, but also lays the groundwork for improved diagnostic and prognostic models through enhanced temporal reasoning.</abstract>
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%0 Conference Proceedings
%T Temporal Relation Extraction in Clinical Texts: A Span-based Graph Transformer Approach
%A Chaturvedi, Rochana
%A Baghershahi, Peyman
%A Medya, Sourav
%A Di Eugenio, Barbara
%Y Che, Wanxiang
%Y Nabende, Joyce
%Y Shutova, Ekaterina
%Y Pilehvar, Mohammad Taher
%S Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
%D 2025
%8 July
%I Association for Computational Linguistics
%C Vienna, Austria
%@ 979-8-89176-251-0
%F chaturvedi-etal-2025-temporal
%X Temporal information extraction from unstructured text is essential for contextualizing events and deriving actionable insights, particularly in the medical domain. We address the task of extracting clinical events and their temporal relations using the well-studied I2B2 2012 Temporal Relations Challenge corpus. This task is inherently challenging due to complex clinical language, long documents, and sparse annotations. We introduce GraphTREx, a novel method integrating span-based entity-relation extraction, clinical large pre-trained language models (LPLMs), and Heterogeneous Graph Transformers (HGT) to capture local and global dependencies. Our HGT component facilitates information propagation across the document through innovative global landmarks that bridge distant entities and improves the state-of-the-art with 5.5% improvement in the tempeval F1 score over the previous best and up to 8.9% improvement on long-range relations, which presents a formidable challenge. We further demonstrate generalizability by establishing a strong baseline on the E3C corpus. Not only does this work advance temporal information extraction, but also lays the groundwork for improved diagnostic and prognostic models through enhanced temporal reasoning.
%R 10.18653/v1/2025.acl-long.1251
%U https://aclanthology.org/2025.acl-long.1251/
%U https://doi.org/10.18653/v1/2025.acl-long.1251
%P 25765-25788
Markdown (Informal)
[Temporal Relation Extraction in Clinical Texts: A Span-based Graph Transformer Approach](https://aclanthology.org/2025.acl-long.1251/) (Chaturvedi et al., ACL 2025)
ACL