<?xml version="1.0" encoding="UTF-8"?>
<modsCollection xmlns="http://www.loc.gov/mods/v3">
<mods ID="li-etal-2025-automated">
    <titleInfo>
        <title>Automated Clinical Data Extraction with Knowledge Conditioned LLMs</title>
    </titleInfo>
    <name type="personal">
        <namePart type="given">Diya</namePart>
        <namePart type="family">Li</namePart>
        <role>
            <roleTerm authority="marcrelator" type="text">author</roleTerm>
        </role>
    </name>
    <name type="personal">
        <namePart type="given">Asim</namePart>
        <namePart type="family">Kadav</namePart>
        <role>
            <roleTerm authority="marcrelator" type="text">author</roleTerm>
        </role>
    </name>
    <name type="personal">
        <namePart type="given">Aijing</namePart>
        <namePart type="family">Gao</namePart>
        <role>
            <roleTerm authority="marcrelator" type="text">author</roleTerm>
        </role>
    </name>
    <name type="personal">
        <namePart type="given">Rui</namePart>
        <namePart type="family">Li</namePart>
        <role>
            <roleTerm authority="marcrelator" type="text">author</roleTerm>
        </role>
    </name>
    <name type="personal">
        <namePart type="given">Richard</namePart>
        <namePart type="family">Bourgon</namePart>
        <role>
            <roleTerm authority="marcrelator" type="text">author</roleTerm>
        </role>
    </name>
    <originInfo>
        <dateIssued>2025-01</dateIssued>
    </originInfo>
    <typeOfResource>text</typeOfResource>
    <relatedItem type="host">
        <titleInfo>
            <title>Proceedings of the 31st International Conference on Computational Linguistics: Industry Track</title>
        </titleInfo>
        <name type="personal">
            <namePart type="given">Owen</namePart>
            <namePart type="family">Rambow</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Leo</namePart>
            <namePart type="family">Wanner</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Marianna</namePart>
            <namePart type="family">Apidianaki</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Hend</namePart>
            <namePart type="family">Al-Khalifa</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Barbara</namePart>
            <namePart type="given">Di</namePart>
            <namePart type="family">Eugenio</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Steven</namePart>
            <namePart type="family">Schockaert</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Kareem</namePart>
            <namePart type="family">Darwish</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <name type="personal">
            <namePart type="given">Apoorv</namePart>
            <namePart type="family">Agarwal</namePart>
            <role>
                <roleTerm authority="marcrelator" type="text">editor</roleTerm>
            </role>
        </name>
        <originInfo>
            <publisher>Association for Computational Linguistics</publisher>
            <place>
                <placeTerm type="text">Abu Dhabi, UAE</placeTerm>
            </place>
        </originInfo>
        <genre authority="marcgt">conference publication</genre>
    </relatedItem>
    <abstract>The extraction of lung lesion information from clinical and medical imaging reports is crucial for research on and clinical care of lung-related diseases. Large language models (LLMs) can be effective at interpreting unstructured text in reports, but they often hallucinate due to a lack of domain-specific knowledge, leading to reduced accuracy and posing challenges for use in clinical settings. To address this, we propose a novel framework that aligns generated internal knowledge with external knowledge through in-context learning (ICL). Our framework employs a retriever to identify relevant units of internal or external knowledge and a grader to evaluate the truthfulness and helpfulness of the retrieved internal-knowledge rules, to align and update the knowledge bases. Experiments with expert-curated test datasets demonstrate that this ICL approach can increase the F1 score for key fields (lesion size, margin and solidity) by an average of 12.9% over existing ICL methods.</abstract>
    <identifier type="citekey">li-etal-2025-automated</identifier>
    <location>
        <url>https://aclanthology.org/2025.coling-industry.13/</url>
    </location>
    <part>
        <date>2025-01</date>
        <extent unit="page">
            <start>149</start>
            <end>162</end>
        </extent>
    </part>
</mods>
</modsCollection>

%0 Conference Proceedings
%T Automated Clinical Data Extraction with Knowledge Conditioned LLMs
%A Li, Diya
%A Kadav, Asim
%A Gao, Aijing
%A Li, Rui
%A Bourgon, Richard
%Y Rambow, Owen
%Y Wanner, Leo
%Y Apidianaki, Marianna
%Y Al-Khalifa, Hend
%Y Eugenio, Barbara Di
%Y Schockaert, Steven
%Y Darwish, Kareem
%Y Agarwal, Apoorv
%S Proceedings of the 31st International Conference on Computational Linguistics: Industry Track
%D 2025
%8 January
%I Association for Computational Linguistics
%C Abu Dhabi, UAE
%F li-etal-2025-automated
%X The extraction of lung lesion information from clinical and medical imaging reports is crucial for research on and clinical care of lung-related diseases. Large language models (LLMs) can be effective at interpreting unstructured text in reports, but they often hallucinate due to a lack of domain-specific knowledge, leading to reduced accuracy and posing challenges for use in clinical settings. To address this, we propose a novel framework that aligns generated internal knowledge with external knowledge through in-context learning (ICL). Our framework employs a retriever to identify relevant units of internal or external knowledge and a grader to evaluate the truthfulness and helpfulness of the retrieved internal-knowledge rules, to align and update the knowledge bases. Experiments with expert-curated test datasets demonstrate that this ICL approach can increase the F1 score for key fields (lesion size, margin and solidity) by an average of 12.9% over existing ICL methods.
%U https://aclanthology.org/2025.coling-industry.13/
%P 149-162

Markdown (Informal)

[Automated Clinical Data Extraction with Knowledge Conditioned LLMs](https://aclanthology.org/2025.coling-industry.13/) (Li et al., COLING 2025)

• Automated Clinical Data Extraction with Knowledge Conditioned LLMs (Li et al., COLING 2025)

ACL

• Diya Li, Asim Kadav, Aijing Gao, Rui Li, and Richard Bourgon. 2025. Automated Clinical Data Extraction with Knowledge Conditioned LLMs. In Proceedings of the 31st International Conference on Computational Linguistics: Industry Track, pages 149–162, Abu Dhabi, UAE. Association for Computational Linguistics.