BioEL: A Comprehensive Python Package for Biomedical Entity Linking

Prasanth Bathala; Christophe Ye; Batuhan Nursal; Shubham Lohiya; David Kartchner; Cassie S. Mitchell

doi:10.18653/v1/2025.findings-naacl.93

BioEL: A Comprehensive Python Package for Biomedical Entity Linking

Prasanth Bathala, Christophe Ye, Batuhan Nursal, Shubham Lohiya, David Kartchner, Cassie S. Mitchell

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Anthology ID:: 2025.findings-naacl.93
Volume:: Findings of the Association for Computational Linguistics: NAACL 2025
Month:: April
Year:: 2025
Address:: Albuquerque, New Mexico
Editors:: Luis Chiruzzo, Alan Ritter, Lu Wang
Venue:: Findings
SIG:
Publisher:: Association for Computational Linguistics
Note:
Pages:: 1709–1721
Language:
URL:: https://aclanthology.org/2025.findings-naacl.93/
DOI:: 10.18653/v1/2025.findings-naacl.93
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Cite (ACL):: Prasanth Bathala, Christophe Ye, Batuhan Nursal, Shubham Lohiya, David Kartchner, and Cassie S. Mitchell. 2025. BioEL: A Comprehensive Python Package for Biomedical Entity Linking. In Findings of the Association for Computational Linguistics: NAACL 2025, pages 1709–1721, Albuquerque, New Mexico. Association for Computational Linguistics.
Cite (Informal):: BioEL: A Comprehensive Python Package for Biomedical Entity Linking (Bathala et al., Findings 2025)
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PDF:: https://aclanthology.org/2025.findings-naacl.93.pdf

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@inproceedings{bathala-etal-2025-bioel,
    title = "{B}io{EL}: A Comprehensive Python Package for Biomedical Entity Linking",
    author = "Bathala, Prasanth  and
      Ye, Christophe  and
      Nursal, Batuhan  and
      Lohiya, Shubham  and
      Kartchner, David  and
      Mitchell, Cassie S.",
    editor = "Chiruzzo, Luis  and
      Ritter, Alan  and
      Wang, Lu",
    booktitle = "Findings of the Association for Computational Linguistics: NAACL 2025",
    month = apr,
    year = "2025",
    address = "Albuquerque, New Mexico",
    publisher = "Association for Computational Linguistics",
    url = "https://aclanthology.org/2025.findings-naacl.93/",
    doi = "10.18653/v1/2025.findings-naacl.93",
    pages = "1709--1721",
    ISBN = "979-8-89176-195-7"
}

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%0 Conference Proceedings
%T BioEL: A Comprehensive Python Package for Biomedical Entity Linking
%A Bathala, Prasanth
%A Ye, Christophe
%A Nursal, Batuhan
%A Lohiya, Shubham
%A Kartchner, David
%A Mitchell, Cassie S.
%Y Chiruzzo, Luis
%Y Ritter, Alan
%Y Wang, Lu
%S Findings of the Association for Computational Linguistics: NAACL 2025
%D 2025
%8 April
%I Association for Computational Linguistics
%C Albuquerque, New Mexico
%@ 979-8-89176-195-7
%F bathala-etal-2025-bioel
%R 10.18653/v1/2025.findings-naacl.93
%U https://aclanthology.org/2025.findings-naacl.93/
%U https://doi.org/10.18653/v1/2025.findings-naacl.93
%P 1709-1721

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Markdown (Informal)

[BioEL: A Comprehensive Python Package for Biomedical Entity Linking](https://aclanthology.org/2025.findings-naacl.93/) (Bathala et al., Findings 2025)

BioEL: A Comprehensive Python Package for Biomedical Entity Linking (Bathala et al., Findings 2025)

ACL

Prasanth Bathala, Christophe Ye, Batuhan Nursal, Shubham Lohiya, David Kartchner, and Cassie S. Mitchell. 2025. BioEL: A Comprehensive Python Package for Biomedical Entity Linking. In Findings of the Association for Computational Linguistics: NAACL 2025, pages 1709–1721, Albuquerque, New Mexico. Association for Computational Linguistics.