@inproceedings{li-etal-2026-focal,
title = "{FOCAL}: Fine-Grained Optimal-Transport-Driven Contrastive Alignment of Language and {ECG}s with Waveform Enhancement",
author = "Li, Haitao and
Liu, Che and
Ding, Zhengyao and
Liu, Ziyi and
Shao, Wenqi and
Huang, Zhengxing",
editor = "Lee, Hung-Yi and
Dev, Sunipa and
Li, Jessy and
Elliott, Desmond",
booktitle = "Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing",
month = oct,
year = "2026",
address = "Budapest, Hungary",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2026.emnlp-main.1244/",
pages = "28349--28367",
ISBN = "979-8-89176-459-0",
abstract = "Electrocardiograms (ECGs) are essential non-invasive tools for diagnosing cardiovascular diseases. While recent multimodal ECG-Report contrastive learning methods have shown promise for zero-shot ECG interpretation, they predominantly rely on global representations, failing to capture the fine-grained relationship between localized waveform patches and specific pathological tags. This limitation is further exacerbated by the fact that nearly 55{\%} of standard clinical reports (e.g., in MIMIC-ECG) lack explicit waveform descriptions. In this paper, we propose FOCAL, a novel framework that achieves precise, fine-grained alignment between localized ECG segments and individual report tags via Optimal Transport. Furthermore, because fine-grained alignment at the tag level exacerbates the false negative problem among reports sharing common diagnoses, we introduce a semantic similarity matrix to guide the contrastive objective and correct misalignments. To address the scarcity of detailed waveform text, we introduce a coarse-to-fine enrichment pipeline that leverages Large Language Models (LLMs) to recover missing semantics, utilizing a coarse model verification step to rigorously filter out hallucinations. Extensive experiments across six datasets demonstrate that FOCAL establishes new state-of-the-art performance in zero-shot prediction and linear probing."
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<abstract>Electrocardiograms (ECGs) are essential non-invasive tools for diagnosing cardiovascular diseases. While recent multimodal ECG-Report contrastive learning methods have shown promise for zero-shot ECG interpretation, they predominantly rely on global representations, failing to capture the fine-grained relationship between localized waveform patches and specific pathological tags. This limitation is further exacerbated by the fact that nearly 55% of standard clinical reports (e.g., in MIMIC-ECG) lack explicit waveform descriptions. In this paper, we propose FOCAL, a novel framework that achieves precise, fine-grained alignment between localized ECG segments and individual report tags via Optimal Transport. Furthermore, because fine-grained alignment at the tag level exacerbates the false negative problem among reports sharing common diagnoses, we introduce a semantic similarity matrix to guide the contrastive objective and correct misalignments. To address the scarcity of detailed waveform text, we introduce a coarse-to-fine enrichment pipeline that leverages Large Language Models (LLMs) to recover missing semantics, utilizing a coarse model verification step to rigorously filter out hallucinations. Extensive experiments across six datasets demonstrate that FOCAL establishes new state-of-the-art performance in zero-shot prediction and linear probing.</abstract>
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%0 Conference Proceedings
%T FOCAL: Fine-Grained Optimal-Transport-Driven Contrastive Alignment of Language and ECGs with Waveform Enhancement
%A Li, Haitao
%A Liu, Che
%A Ding, Zhengyao
%A Liu, Ziyi
%A Shao, Wenqi
%A Huang, Zhengxing
%Y Lee, Hung-Yi
%Y Dev, Sunipa
%Y Li, Jessy
%Y Elliott, Desmond
%S Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing
%D 2026
%8 October
%I Association for Computational Linguistics
%C Budapest, Hungary
%@ 979-8-89176-459-0
%F li-etal-2026-focal
%X Electrocardiograms (ECGs) are essential non-invasive tools for diagnosing cardiovascular diseases. While recent multimodal ECG-Report contrastive learning methods have shown promise for zero-shot ECG interpretation, they predominantly rely on global representations, failing to capture the fine-grained relationship between localized waveform patches and specific pathological tags. This limitation is further exacerbated by the fact that nearly 55% of standard clinical reports (e.g., in MIMIC-ECG) lack explicit waveform descriptions. In this paper, we propose FOCAL, a novel framework that achieves precise, fine-grained alignment between localized ECG segments and individual report tags via Optimal Transport. Furthermore, because fine-grained alignment at the tag level exacerbates the false negative problem among reports sharing common diagnoses, we introduce a semantic similarity matrix to guide the contrastive objective and correct misalignments. To address the scarcity of detailed waveform text, we introduce a coarse-to-fine enrichment pipeline that leverages Large Language Models (LLMs) to recover missing semantics, utilizing a coarse model verification step to rigorously filter out hallucinations. Extensive experiments across six datasets demonstrate that FOCAL establishes new state-of-the-art performance in zero-shot prediction and linear probing.
%U https://aclanthology.org/2026.emnlp-main.1244/
%P 28349-28367
Markdown (Informal)
[FOCAL: Fine-Grained Optimal-Transport-Driven Contrastive Alignment of Language and ECGs with Waveform Enhancement](https://aclanthology.org/2026.emnlp-main.1244/) (Li et al., EMNLP 2026)
ACL