LLM Explainability with Counterfactual Chains and Causal Graphs

Nirit Nussbaum-Hoffer, Nitay Calderon, Liat Ein-Dor, Roi Reichart


Abstract
Causal graphs provide a high-level language for making mechanisms transparent. Recent work uses Large Language Models (LLMs) to recover causal graphs of external-world processes. Instead, in this paper, we use causal graphs to model LLM inference itself, providing stakeholders with a transparent view of how the model perceives and organizes high-level concepts to produce a prediction. We propose a four-phase method for constructing such graphs. Given a target LLM and a set of textual examples, our method discovers class-discriminative, human-interpretable concepts and maps each input to LLM-perceived concept states. We then introduce an MCMC-inspired counterfactual augmentation procedure that expands the sparse observational data through chains of counterfactuals. This enables stable causal discovery with σ-CG, yielding informative, interpretable graphs. We apply our method to three LLMs across disease diagnosis, sentiment analysis, and LLM-as-a-judge classification tasks. We evaluate the learned graphs for predictive fidelity and structural stability, and the MCMC-inspired augmentation for convergence and downstream utility. Our results show that the discovered causal graphs capture meaningful dependencies consistent with LLMs’ reasoning. Together, this paper provides a foundation for concept-level explainability of LLMs.
Anthology ID:
2026.emnlp-main.2152
Volume:
Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
EMNLP
SIG:
SIGDAT
Publisher:
Association for Computational Linguistics
Note:
Pages:
48927–48967
Language:
URL:
https://aclanthology.org/2026.emnlp-main.2152/
DOI:
Bibkey:
Cite (ACL):
Nirit Nussbaum-Hoffer, Nitay Calderon, Liat Ein-Dor, and Roi Reichart. 2026. LLM Explainability with Counterfactual Chains and Causal Graphs. In Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing, pages 48927–48967, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
LLM Explainability with Counterfactual Chains and Causal Graphs (Nussbaum-Hoffer et al., EMNLP 2026)
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PDF:
https://aclanthology.org/2026.emnlp-main.2152.pdf