Beneath the Surface of Chains-of-Thought: A Mechanistic Interpretation of Reasoning Operations in LLMs

Seogyeong Jeong, Jaehui Hwang, Dongyoon Han, Geonmo Gu, Alice Oh, Taekyung Kim


Abstract
Reasoning in large language models unfolds through diverse functional operations, such as problem formulation, goal decomposition, and deduction. Although these operations are explicitly distinguished in text, little is known about how they are geometrically organized in representation spaces. To this end, we investigate whether distinct reasoning operations exhibit corresponding geometric structure in hidden representations. We find that operations are separable in held-out representations, with separability peaking in middle layers, and verify that this structure is not explained by lexical or positional confounds. Across layers, token-wise operation-alignment becomes more distributed over spans, while identical surface tokens are represented differently depending on the operation of its surrounding chunk. Attention-masking interventions further show that operation-aligned representations at chunk onset depend on preceding reasoning context. Consequently, our work demonstrates that language models maintain representational correspondence between linguistic reasoning expressions and their internal geometric structures. Code and project materials are available at https://github.com/naver-ai/beneath-cot.
Anthology ID:
2026.emnlp-main.2644
Volume:
Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
EMNLP
SIG:
SIGDAT
Publisher:
Association for Computational Linguistics
Note:
Pages:
60143–60185
Language:
URL:
https://aclanthology.org/2026.emnlp-main.2644/
DOI:
Bibkey:
Cite (ACL):
Seogyeong Jeong, Jaehui Hwang, Dongyoon Han, Geonmo Gu, Alice Oh, and Taekyung Kim. 2026. Beneath the Surface of Chains-of-Thought: A Mechanistic Interpretation of Reasoning Operations in LLMs. In Proceedings of the 2026 Conference on Empirical Methods in Natural Language Processing, pages 60143–60185, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
Beneath the Surface of Chains-of-Thought: A Mechanistic Interpretation of Reasoning Operations in LLMs (Jeong et al., EMNLP 2026)
Copy Citation:
PDF:
https://aclanthology.org/2026.emnlp-main.2644.pdf