Modular Expert Merging for Biomedical Retrieval

Sameh Khattab, Jean-Philippe Corbeil, Osman Alperen Çinar-Koraş, Amin Dada, Julian Friedrich, Jiawei He, Douglas Teodoro, Jens Kleesiek


Abstract
Adapting general-purpose LLMs into domain-specialized dense retrievers typically requires large-scale training on mixed-domain data. We show that merging independently trained domain-specialized experts consistently exceeds this approach across four decoder-only LLM families (0.6B–7B), four merging methods, and twelve medical and general retrieval tasks from MTEB, suggesting that parameter-space composition captures complementary domain strengths that large-scale mixed-domain training averages out. To further maximize expert quality, we introduce Synthesize-Train-Merge (STM), a modular framework that synthesizes hard negatives with a top-tier LLM and fine-tunes domain-specialized experts via LoRA before merging them, without continual pre-training. Synthesized hard negatives yield the largest gains for smaller models, and STM achieves strong performance on biomedical retrieval tasks while maintaining competitive general-domain results across all four backbone families.
Anthology ID:
2026.findings-emnlp.1121
Volume:
Findings of the Association for Computational Linguistics: EMNLP 2026
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
Findings
SIG:
SIGDAT
Publisher:
Association for Computational Linguistics
Note:
Pages:
23732–23752
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URL:
https://aclanthology.org/2026.findings-emnlp.1121/
DOI:
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Cite (ACL):
Sameh Khattab, Jean-Philippe Corbeil, Osman Alperen Çinar-Koraş, Amin Dada, Julian Friedrich, Jiawei He, Douglas Teodoro, and Jens Kleesiek. 2026. Modular Expert Merging for Biomedical Retrieval. In Findings of the Association for Computational Linguistics: EMNLP 2026, pages 23732–23752, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
Modular Expert Merging for Biomedical Retrieval (Khattab et al., Findings 2026)
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PDF:
https://aclanthology.org/2026.findings-emnlp.1121.pdf