CQA-Eval: Designing Reliable Evaluations of Multi-paragraph Clinical QA under Resource Constraints

Federica Bologna, Tiffany Pan, Matthew Wilkens, Yue Guo, Lucy Lu Wang


Abstract
Evaluating multi-paragraph clinical question answering (QA) systems is resource-intensive and challenging: accurate judgments require medical expertise and achieving consistent human judgments over multi-paragraph text is difficult. We introduce CQA-Eval, an evaluation framework and set of evaluation recommendations for limited-resource and high-expertise settings. Based on physician annotations of 300 real patient questions answered by physicians and LLMs, we compare coarse answer-level versus fine-grained sentence-level evaluation over the dimensions of correctness, relevance, and risk disclosure. We find that inter-annotator agreement (IAA) varies by dimension: fine-grained annotation improves agreement on correctness, coarse improves agreement on relevance, and judgments on communicates-risks remain inconsistent. Additionally, annotating only a small subset of sentences can provide reliability comparable to coarse annotations, reducing cost and effort. Data and code available at https://github.com/federicabologna/cqa-eval under a CC-BY license.
Anthology ID:
2026.findings-emnlp.1537
Volume:
Findings of the Association for Computational Linguistics: EMNLP 2026
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
Findings
SIG:
SIGDAT
Publisher:
Association for Computational Linguistics
Note:
Pages:
32694–32707
Language:
URL:
https://aclanthology.org/2026.findings-emnlp.1537/
DOI:
10.18653/2026.findings-emnlp.1537
Bibkey:
Cite (ACL):
Federica Bologna, Tiffany Pan, Matthew Wilkens, Yue Guo, and Lucy Lu Wang. 2026. CQA-Eval: Designing Reliable Evaluations of Multi-paragraph Clinical QA under Resource Constraints. In Findings of the Association for Computational Linguistics: EMNLP 2026, pages 32694–32707, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
CQA-Eval: Designing Reliable Evaluations of Multi-paragraph Clinical QA under Resource Constraints (Bologna et al., Findings 2026)
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PDF:
https://aclanthology.org/2026.findings-emnlp.1537.pdf