Where Do Apparent LLM Clinical Triage Failures Arise? Localizing the Multiple-Choice Format Effect

David Fraile Navarro, Berardino Como, Jialei Sheng, Soundariya Ananthan, Shlomo Berkovsky


Abstract
LLM evaluations using clinician-authored triage vignettes have reported substantial under-triage under constrained multiple-choice testing. Yet model performance on the same clinical cases can change when responses are generated in free text. We test whether this format effect appears while the case is processed or when clinical information is mapped to the final answer. Using sparse-autoencoder (SAE) features in Gemma 3 4B/12B IT and Qwen3-8B, we find that medical features fire on the shared clinical narrative under both formats but are inactive at the multiple-choice decision token. Emergency-tier information is linearly decodable from vignette representations with ROC-AUC 0.95–1.00 under both formats, with no significant format difference, but is attenuated at the decision token. Natural-language autoencoder verbalization and top-feature characterization associate that token with the multiple-choice scaffold. In a direct linear projection, the identified medical features contribute zero, whereas scaffold-peaking features account for over 91% of unsigned attribution in both Gemma models. Behaviorally, whether multiple choice improves or worsens performance depends on the model. Option-order shuffles rule out simple positional bias, and cases that differ between formats are usually one severity tier apart. Together, these findings place the strongest correlates of the format effect at answer selection while leaving open whether unmeasured clinical representations also differ.
Anthology ID:
2026.findings-emnlp.1963
Volume:
Findings of the Association for Computational Linguistics: EMNLP 2026
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
Findings
SIG:
SIGDAT
Publisher:
Association for Computational Linguistics
Note:
Pages:
41857–41885
Language:
URL:
https://aclanthology.org/2026.findings-emnlp.1963/
DOI:
10.18653/2026.findings-emnlp.1963
Bibkey:
Cite (ACL):
David Fraile Navarro, Berardino Como, Jialei Sheng, Soundariya Ananthan, and Shlomo Berkovsky. 2026. Where Do Apparent LLM Clinical Triage Failures Arise? Localizing the Multiple-Choice Format Effect. In Findings of the Association for Computational Linguistics: EMNLP 2026, pages 41857–41885, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
Where Do Apparent LLM Clinical Triage Failures Arise? Localizing the Multiple-Choice Format Effect (Navarro et al., Findings 2026)
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PDF:
https://aclanthology.org/2026.findings-emnlp.1963.pdf