Why Are LLM Backdoor Defenses Fragmented? A Feature-Level Explanation with Sparse Autoencoders

Yizhe Zeng, Chenxu Niu, Wei Zhang, Hao Huang, Yunpeng Li, Handongxu, Dan Du, Cheng Hong, Hequn Xian, Yuling Liu


Abstract
Backdoor attacks pose a serious threat to large language models (LLMs), but existing defenses remain fragmented, failing to provide unified defense against both dirty-label and clean-label attacks. To investigate why such fragmentation arises, we present the first systematic feature-level mechanistic analysis of LLM backdoors using sparse autoencoders (SAEs). Starting from a 2×2 comparison of clean and poisoned models on clean and triggered inputs, we trace backdoor-induced logit shifts to high-contributing SAE features and categorize them into four roles: interaction, suppressed, mixed, and weight-modified features. This taxonomy reveals systematic encoding differences: dirty-label backdoors are dominated by isolated interaction features, whereas clean-label backdoors rely more on heterogeneous mixtures of mixed and weight-modified features. These differences explain why existing defenses remain fragmented across attack paradigms. We validate this hypothesis through inference-time feature clamping, which reduces ASR to at most **10.8%** in most dirty-label settings and at most **15.4%** in the majority of clean-label settings, while preserving benign-task performance. These results show that SAE-based analysis can explain defense fragmentation and guide interpretable backdoor mitigation.
Anthology ID:
2026.findings-emnlp.198
Volume:
Findings of the Association for Computational Linguistics: EMNLP 2026
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
Findings
SIG:
SIGDAT
Publisher:
Association for Computational Linguistics
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Pages:
4187–4208
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URL:
https://aclanthology.org/2026.findings-emnlp.198/
DOI:
Bibkey:
Cite (ACL):
Yizhe Zeng, Chenxu Niu, Wei Zhang, Hao Huang, Yunpeng Li, Handongxu, Dan Du, Cheng Hong, Hequn Xian, and Yuling Liu. 2026. Why Are LLM Backdoor Defenses Fragmented? A Feature-Level Explanation with Sparse Autoencoders. In Findings of the Association for Computational Linguistics: EMNLP 2026, pages 4187–4208, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
Why Are LLM Backdoor Defenses Fragmented? A Feature-Level Explanation with Sparse Autoencoders (Zeng et al., Findings 2026)
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PDF:
https://aclanthology.org/2026.findings-emnlp.198.pdf