Diagnosing Knowledge Conflict in Multimodal Long-Chain Reasoning

Jing Tang, Kun Wang, Haolang Lu, Hongjin Chen, KaiTao Chen, Zhongxiang Sun, Qiankun Li, Lingjuan Lyu, Guoshun Nan, Zhigang Zeng


Abstract
Multimodal large language models in long chain-of-thought reasoning often fail when different knowledge sources provide conflicting signals. We formalize these failures under a unified notion of knowledge conflict, distinguishing input-level objective conflict from process-level effective conflict. Through probing internal representations, we reveal that: **(I) Linear Separability**: different conflict types are explicitly encoded as linearly separable features rather than entangled; **(II) Depth Localization**: conflict signals concentrate in mid-to-late layers, indicating a distinct processing stage for conflict encoding; **(III) Hierarchical Consistency**: aggregating noisy token-level signals along trajectories robustly recovers input-level conflict types; and **(IV) Directional Asymmetry**: reinforcing the model’s implicit source preference under conflict is far easier than enforcing the opposite source. Our findings provide a mechanism-level view of multimodal reasoning under knowledge conflict and enable principled diagnosis and control of long-CoT failures. Code is available at [anonymous link](https://anonymous.4open.science/r/Diagnosing-Knowledge-Conflict-C78D/).
Anthology ID:
2026.findings-emnlp.2240
Volume:
Findings of the Association for Computational Linguistics: EMNLP 2026
Month:
October
Year:
2026
Address:
Budapest, Hungary
Editors:
Hung-Yi Lee, Sunipa Dev, Jessy Li, Desmond Elliott
Venue:
Findings
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SIGDAT
Publisher:
Association for Computational Linguistics
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Pages:
47947–47986
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URL:
https://aclanthology.org/2026.findings-emnlp.2240/
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Cite (ACL):
Jing Tang, Kun Wang, Haolang Lu, Hongjin Chen, KaiTao Chen, Zhongxiang Sun, Qiankun Li, Lingjuan Lyu, Guoshun Nan, and Zhigang Zeng. 2026. Diagnosing Knowledge Conflict in Multimodal Long-Chain Reasoning. In Findings of the Association for Computational Linguistics: EMNLP 2026, pages 47947–47986, Budapest, Hungary. Association for Computational Linguistics.
Cite (Informal):
Diagnosing Knowledge Conflict in Multimodal Long-Chain Reasoning (Tang et al., Findings 2026)
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https://aclanthology.org/2026.findings-emnlp.2240.pdf