@inproceedings{kilicoglu-etal-2016-annotating,
title = "Annotating Named Entities in Consumer Health Questions",
author = "Kilicoglu, Halil and
Abacha, Asma Ben and
Mrabet, Yassine and
Roberts, Kirk and
Rodriguez, Laritza and
Shooshan, Sonya and
Demner-Fushman, Dina",
editor = "Calzolari, Nicoletta and
Choukri, Khalid and
Declerck, Thierry and
Goggi, Sara and
Grobelnik, Marko and
Maegaard, Bente and
Mariani, Joseph and
Mazo, Helene and
Moreno, Asuncion and
Odijk, Jan and
Piperidis, Stelios",
booktitle = "Proceedings of the Tenth International Conference on Language Resources and Evaluation ({LREC}'16)",
month = may,
year = "2016",
address = "Portoro{\v{z}}, Slovenia",
publisher = "European Language Resources Association (ELRA)",
url = "https://aclanthology.org/L16-1530",
pages = "3325--3332",
abstract = "We describe a corpus of consumer health questions annotated with named entities. The corpus consists of 1548 de-identified questions about diseases and drugs, written in English. We defined 15 broad categories of biomedical named entities for annotation. A pilot annotation phase in which a small portion of the corpus was double-annotated by four annotators was followed by a main phase in which double annotation was carried out by six annotators, and a reconciliation phase in which all annotations were reconciled by an expert. We conducted the annotation in two modes, manual and assisted, to assess the effect of automatic pre-annotation and calculated inter-annotator agreement. We obtained moderate inter-annotator agreement; assisted annotation yielded slightly better agreement and fewer missed annotations than manual annotation. Due to complex nature of biomedical entities, we paid particular attention to nested entities for which we obtained slightly lower inter-annotator agreement, confirming that annotating nested entities is somewhat more challenging. To our knowledge, the corpus is the first of its kind for consumer health text and is publicly available.",
}
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%0 Conference Proceedings
%T Annotating Named Entities in Consumer Health Questions
%A Kilicoglu, Halil
%A Abacha, Asma Ben
%A Mrabet, Yassine
%A Roberts, Kirk
%A Rodriguez, Laritza
%A Shooshan, Sonya
%A Demner-Fushman, Dina
%Y Calzolari, Nicoletta
%Y Choukri, Khalid
%Y Declerck, Thierry
%Y Goggi, Sara
%Y Grobelnik, Marko
%Y Maegaard, Bente
%Y Mariani, Joseph
%Y Mazo, Helene
%Y Moreno, Asuncion
%Y Odijk, Jan
%Y Piperidis, Stelios
%S Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC’16)
%D 2016
%8 May
%I European Language Resources Association (ELRA)
%C Portorož, Slovenia
%F kilicoglu-etal-2016-annotating
%X We describe a corpus of consumer health questions annotated with named entities. The corpus consists of 1548 de-identified questions about diseases and drugs, written in English. We defined 15 broad categories of biomedical named entities for annotation. A pilot annotation phase in which a small portion of the corpus was double-annotated by four annotators was followed by a main phase in which double annotation was carried out by six annotators, and a reconciliation phase in which all annotations were reconciled by an expert. We conducted the annotation in two modes, manual and assisted, to assess the effect of automatic pre-annotation and calculated inter-annotator agreement. We obtained moderate inter-annotator agreement; assisted annotation yielded slightly better agreement and fewer missed annotations than manual annotation. Due to complex nature of biomedical entities, we paid particular attention to nested entities for which we obtained slightly lower inter-annotator agreement, confirming that annotating nested entities is somewhat more challenging. To our knowledge, the corpus is the first of its kind for consumer health text and is publicly available.
%U https://aclanthology.org/L16-1530
%P 3325-3332
Markdown (Informal)
[Annotating Named Entities in Consumer Health Questions](https://aclanthology.org/L16-1530) (Kilicoglu et al., LREC 2016)
ACL
- Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Kirk Roberts, Laritza Rodriguez, Sonya Shooshan, and Dina Demner-Fushman. 2016. Annotating Named Entities in Consumer Health Questions. In Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC'16), pages 3325–3332, Portorož, Slovenia. European Language Resources Association (ELRA).