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Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
K. Bretonnel Cohen | Lynette Hirschman | Hagit Shatkay | Christian Blaschke

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Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data
Ben Wellner

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Adaptive String Similarity Metrics for Biomedical Reference Resolution
Ben Wellner | José Castaño | James Pustejovsky

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Unsupervised Gene/Protein Named Entity Normalization Using Automatically Extracted Dictionaries
Aaron Cohen

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A Machine Learning Approach to Acronym Generation
Yoshimasa Tsuruoka | Sophia Ananiadou | Jun’ichi Tsujii

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MedTag: A Collection of Biomedical Annotations
Lawrence H. Smith | Lorraine Tanabe | Thomas Rindflesch | W. John Wilbur

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Corpus Design for Biomedical Natural Language Processing
K. Bretonnel Cohen | Lynne Fox | Philip V. Ogren | Lawrence Hunter

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Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions
Arun Ramani | Razvan Bunescu | Raymond Mooney | Edward Marcotte

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IntEx: A Syntactic Role Driven Protein-Protein Interaction Extractor for Bio-Medical Text
Syed Toufeeq Ahmed | Deepthi Chidambaram | Hasan Davulcu | Chitta Baral