<?xml version="1.0" encoding="UTF-8" ?>
 <volume id="W05">
   <paper id="1300">
        <title>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</title>
        <editor><first>K. Bretonnel</first><last>Cohen</last></editor>
        <editor><first>Lynette</first><last>Hirschman</last></editor>
        <editor><first>Hagit</first><last>Shatkay</last></editor>
        <editor><first>Christian</first><last>Blaschke</last></editor>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <url>http://www.aclweb.org/anthology/W/W05/W05-13</url>
        <bibtype>book</bibtype>
        <bibkey>Biolink:2005</bibkey>
   </paper>
   <paper id="1301">
        <title>Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data</title>
        <author><first>Ben</first><last>Wellner</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>1&#8211;8</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1301</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>wellner:2005:Biolink</bibkey>
   </paper>
   <paper id="1302">
        <title>Adaptive String Similarity Metrics for Biomedical Reference Resolution</title>
        <author><first>Ben</first><last>Wellner</last></author>
        <author><first>Jos&#233;</first><last>Casta&#241;o</last></author>
        <author><first>James</first><last>Pustejovsky</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>9&#8211;16</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1302</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>wellner-castano-pustejovsky:2005:Biolink</bibkey>
   </paper>
   <paper id="1303">
        <title>Unsupervised Gene/Protein Named Entity Normalization Using Automatically Extracted Dictionaries</title>
        <author><first>Aaron</first><last>Cohen</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>17&#8211;24</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1303</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>cohen:2005:Biolink</bibkey>
   </paper>
   <paper id="1304">
        <title>A Machine Learning Approach to Acronym Generation</title>
        <author><first>Yoshimasa</first><last>Tsuruoka</last></author>
        <author><first>Sophia</first><last>Ananiadou</last></author>
        <author><first>Jun'ichi</first><last>Tsujii</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>25&#8211;31</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1304</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>tsuruoka-ananiadou-tsujii:2005:Biolink</bibkey>
   </paper>
   <paper id="1305">
        <title>MedTag: A Collection of Biomedical Annotations</title>
        <author><first>Lawrence H.</first><last>Smith</last></author>
        <author><first>Lorraine</first><last>Tanabe</last></author>
        <author><first>Thomas</first><last>Rindflesch</last></author>
        <author><first>W. John</first><last>Wilbur</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>32&#8211;37</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1305</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>smith-EtAl:2005:Biolink</bibkey>
   </paper>
   <paper id="1306">
        <title>Corpus Design for Biomedical Natural Language Processing</title>
        <author><first>K. Bretonnel</first><last>Cohen</last></author>
        <author><first>Lynne</first><last>Fox</last></author>
        <author><first>Philip V.</first><last>Ogren</last></author>
        <author><first>Lawrence</first><last>Hunter</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>38&#8211;45</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1306</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>cohen-EtAl:2005:Biolink</bibkey>
   </paper>
   <paper id="1307">
        <title>Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions</title>
        <author><first>Arun</first><last>Ramani</last></author>
        <author><first>Razvan</first><last>Bunescu</last></author>
        <author><first>Raymond</first><last>Mooney</last></author>
        <author><first>Edward</first><last>Marcotte</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>46&#8211;53</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1307</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>ramani-EtAl:2005:Biolink</bibkey>
   </paper>
   <paper id="1308">
        <title>IntEx: A Syntactic Role Driven Protein-Protein Interaction Extractor for Bio-Medical Text</title>
        <author><first>Syed Toufeeq</first><last>Ahmed</last></author>
        <author><first>Deepthi</first><last>Chidambaram</last></author>
        <author><first>Hasan</first><last>Davulcu</last></author>
        <author><first>Chitta</first><last>Baral</last></author>
        <booktitle>Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics</booktitle>
        <month>June</month>
        <year>2005</year>
        <address>Detroit</address>
        <publisher>Association for Computational Linguistics</publisher>
        <pages>54&#8211;61</pages>
        <url>http://www.aclweb.org/anthology/W/W05/W05-1308</url>
        <bibtype>inproceedings</bibtype>
        <bibkey>ahmed-EtAl:2005:Biolink</bibkey>
   </paper>
 </volume>
