@Book{BioNLP:2007,
  editor    = {K. Bretonnel Cohen  and  Dina Demner-Fushman  and  Carol Friedman  and  Lynette Hirschman  and  John Pestian},
  title     = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-10}
}

@InProceedings{roark-mitchell-hollingshead:2007:BioNLP,
  author    = {Roark, Brian  and  Mitchell, Margaret  and  Hollingshead, Kristy},
  title     = {Syntactic complexity measures for detecting Mild Cognitive Impairment},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {1--8},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1001}
}

@InProceedings{mcinnes-pedersen-pakhomov:2007:BioNLP,
  author    = {McInnes, Bridget  and  Pedersen, Ted  and  Pakhomov, Serguei},
  title     = {Determining the Syntactic Structure of Medical Terms in Clinical Notes},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {9--16},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1002}
}

@InProceedings{doan-kawazoe-collier:2007:BioNLP,
  author    = {Doan, Son  and  Kawazoe, Ai  and  Collier, Nigel},
  title     = {The Role of Roles in Classifying Annotated Biomedical Text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {17--24},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1003}
}

@InProceedings{pyysalo-EtAl:2007:BioNLP,
  author    = {Pyysalo, Sampo  and  Ginter, Filip  and  Laippala, Veronika  and  Haverinen, Katri  and  Heimonen, Juho  and  Salakoski, Tapio},
  title     = {On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {25--32},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1004}
}

@InProceedings{liu-blouin-keselj:2007:BioNLP,
  author    = {Liu, Haibin  and  Blouin, Christian  and  Keselj, Vlado},
  title     = {An Unsupervised Method for Extracting Domain-specific Affixes in Biological Literature},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {33--40},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1005}
}

@InProceedings{xu-fan-friedman:2007:BioNLP,
  author    = {Xu, Hua  and  Fan, Jung-Wei  and  Friedman, Carol},
  title     = {Combining multiple evidence for gene symbol disambiguation},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {41--48},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1006}
}

@InProceedings{elhadad-sutaria:2007:BioNLP,
  author    = {Elhadad, Noemie  and  Sutaria, Komal},
  title     = {Mining a Lexicon of Technical Terms and Lay Equivalents},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {49--56},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1007}
}

@InProceedings{corbett-batchelor-teufel:2007:BioNLP,
  author    = {Corbett, Peter  and  Batchelor, Colin  and  Teufel, Simone},
  title     = {Annotation of Chemical Named Entities},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {57--64},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1008}
}

@InProceedings{alex-haddow-grover:2007:BioNLP,
  author    = {Alex, Beatrice  and  Haddow, Barry  and  Grover, Claire},
  title     = {Recognising Nested Named Entities in Biomedical Text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {65--72},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1009}
}

@InProceedings{hearst-EtAl:2007:BioNLP,
  author    = {Hearst, Marti  and  Divoli, Anna  and  Jerry, Ye  and  Wooldridge, Michael},
  title     = {Exploring the Efficacy of Caption Search for Bioscience Journal Search Interfaces},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {73--80},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1010}
}

@InProceedings{chapman-dowling-chu:2007:BioNLP,
  author    = {Chapman, Wendy  and  Dowling, John  and  Chu, David},
  title     = {ConText: An Algorithm for Identifying Contextual Features from Clinical Text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {81--88},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1011}
}

@InProceedings{madkour-EtAl:2007:BioNLP,
  author    = {Madkour, Amgad  and  Darwish, Kareem  and  Hassan, Hany  and  Hassan, Ahmed  and  Emam, Ossama},
  title     = {BioNoculars: Extracting Protein-Protein Interactions from Biomedical Text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {89--96},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1012}
}

@InProceedings{pestian-EtAl:2007:BioNLP,
  author    = {Pestian, John P.  and  Brew, Chris  and  Matykiewicz, Pawel  and  Hovermale, DJ  and  Johnson, Neil  and  Cohen, K. Bretonnel  and  Duch, Wlodzislaw},
  title     = {A shared task involving multi-label classification of clinical free text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {97--104},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1013}
}

@InProceedings{aronson-EtAl:2007:BioNLP,
  author    = {Aronson, Alan R.  and  Bodenreider, Olivier  and  Demner-Fushman, Dina  and  Fung, Kin Wah  and  Lee, Vivian K.  and  Mork, James G.  and  Neveol, Aurelie  and  Peters, Lee  and  Rogers, Willie J.},
  title     = {From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {105--112},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1014}
}

@InProceedings{bouffier-poibeau:2007:BioNLP,
  author    = {Bouffier, Amanda  and  Poibeau, Thierry},
  title     = {Automatically Restructuring Practice Guidelines using the GEM DTD},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {113--120},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1015}
}

@InProceedings{chung-coiera:2007:BioNLP,
  author    = {Chung, Grace  and  Coiera, Enrico},
  title     = {A Study of Structured Clinical Abstracts and the Semantic Classification of Sentences},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {121--128},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1016}
}

@InProceedings{crammer-EtAl:2007:BioNLP,
  author    = {Crammer, Koby  and  Dredze, Mark  and  Ganchev, Kuzman  and  Pratim Talukdar, Partha  and  Carroll, Steven},
  title     = {Automatic Code Assignment to Medical Text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {129--136},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1017}
}

@InProceedings{fiszman-EtAl:2007:BioNLP,
  author    = {Fiszman, Marcelo  and  Demner-Fushman, Dina  and  Lang, Francois M.  and  Goetz, Philip  and  Rindflesch, Thomas C.},
  title     = {Interpreting comparative constructions in biomedical text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {137--144},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1018}
}

@InProceedings{haddow-matthews:2007:BioNLP,
  author    = {Haddow, Barry  and  Matthews, Michael},
  title     = {The Extraction of Enriched Protein-Protein Interactions from Biomedical Text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {145--152},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1019}
}

@InProceedings{hakenberg:2007:BioNLP,
  author    = {Hakenberg, J\"{o}rg},
  title     = {What's in a gene name? Automated refinement of gene name dictionaries},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {153--160},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1020}
}

@InProceedings{hardcastle-hallett:2007:BioNLP,
  author    = {Hardcastle, David  and  Hallett, Catalina},
  title     = {Exploring the Use of NLP in the Disclosure of Electronic Patient Records},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {161--162},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1021}
}

@InProceedings{lewin:2007:BioNLP,
  author    = {Lewin, Ian},
  title     = {BaseNPs that contain gene names: domain specificity and genericity},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {163--170},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1022}
}

@InProceedings{mcintosh-curran:2007:BioNLP,
  author    = {McIntosh, Tara  and  Curran, James R.},
  title     = {Challenges for extracting biomedical knowledge from full text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {171--178},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1023}
}

@InProceedings{miller-torii-vijayshanker:2007:BioNLP,
  author    = {Miller, John E.  and  Torii, Manabu  and  Vijay-Shanker, K.},
  title     = {Adaptation of POS Tagging for Multiple BioMedical Domains},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {179--180},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1024}
}

@InProceedings{mykowiecka-marciniak:2007:BioNLP,
  author    = {Mykowiecka, Agnieszka  and  Marciniak, Malgorzata},
  title     = {Information Extraction from Patients' Free Form Documentation},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {181--182},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1025}
}

@InProceedings{neveol-mork-aronson:2007:BioNLP,
  author    = {Neveol, Aurelie  and  Mork, James G.  and  Aronson, Alan R.},
  title     = {Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {183--190},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1026}
}

@InProceedings{patrick-zhang-wang:2007:BioNLP,
  author    = {Patrick, Jon  and  Zhang, Yitao  and  Wang, Yefeng},
  title     = {Developing Feature Types for Classifying Clinical Notes},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {191--192},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1027}
}

@InProceedings{poprat-hahn:2007:BioNLP,
  author    = {Poprat, Michael  and  Hahn, Udo},
  title     = {Quantitative Data on Referring Expressions in Biomedical Abstracts},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {193--194},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1028}
}

@InProceedings{sanchez-poesio:2007:BioNLP,
  author    = {Sanchez, Olivia  and  Poesio, Massimo},
  title     = {Discovering contradicting protein-protein interactions in text},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {195--196},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1029}
}

@InProceedings{sinclair-webber:2007:BioNLP,
  author    = {Sinclair, Gail  and  Webber, Bonnie},
  title     = {Marking time in developmental biology},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {197--198},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1030}
}

@InProceedings{vlachos:2007:BioNLP,
  author    = {Vlachos, Andreas},
  title     = {Evaluating and combining and biomedical named entity recognition systems},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {199--200},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1031}
}

@InProceedings{wilbur:2007:BioNLP,
  author    = {Wilbur, W. John},
  title     = {Unsupervised Learning of the Morpho-Semantic Relationship in MEDLINE},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {201--208},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1032}
}

@InProceedings{yoshida-tsujii:2007:BioNLP,
  author    = {Yoshida, Kazuhiro  and  Tsujii, Jun'ichi},
  title     = {Reranking for Biomedical Named-Entity Recognition},
  booktitle = {Biological, translational, and clinical language processing},
  month     = {June},
  year      = {2007},
  address   = {Prague, Czech Republic},
  publisher = {Association for Computational Linguistics},
  pages     = {209--216},
  url       = {http://www.aclweb.org/anthology/W/W07/W07-1033}
}