@Book{BioNLP:2008,
  editor    = {Dina Demner-Fushman  and  Sophia Ananiadou  and  Kevin Bretonnel Cohen  and  John Pestian  and  Jun'ichi Tsujii  and  Bonnie Webber},
  title     = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-06}
}

@InProceedings{airola-EtAl:2008:BioNLP,
  author    = {Airola, Antti  and  Pyysalo, Sampo  and  Bj\"{o}rne, Jari  and  Pahikkala, Tapio  and  Ginter, Filip  and  Salakoski, Tapio},
  title     = {A Graph Kernel for Protein-Protein Interaction Extraction},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {1--9},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0601}
}

@InProceedings{roberts-gaizauskas-hepple:2008:BioNLP,
  author    = {Roberts, Angus  and  Gaizauskas, Robert  and  Hepple, Mark},
  title     = {Extracting Clinical Relationships from Patient Narratives},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {10--18},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0602}
}

@InProceedings{haddow:2008:BioNLP,
  author    = {Haddow, Barry},
  title     = {Using Automated Feature Optimisation to Create an Adaptable Relation Extraction System},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {19--27},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0603}
}

@InProceedings{tudor-vijayshanker-schmidt:2008:BioNLP,
  author    = {Tudor, Catalina O  and  Vijay-Shanker, K  and  Schmidt, Carl J},
  title     = {Mining the Biomedical Literature for Genic Information},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {28--29},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0604}
}

@InProceedings{tsuruoka-tsujii-ananiadou:2008:BioNLP,
  author    = {Tsuruoka, Yoshimasa  and  Tsujii, Jun'ichi  and  Ananiadou, Sophia},
  title     = {Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {30--37},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0605}
}

@InProceedings{szarvas-EtAl:2008:BioNLP,
  author    = {Szarvas, Gy\"{o}rgy  and  Vincze, Veronika  and  Farkas, Rich\'{a}rd  and  Csirik, J\'{a}nos},
  title     = {The BioScope corpus: annotation for negation, uncertainty and their scope in biomedical texts},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {38--45},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0606}
}

@InProceedings{kilicoglu-bergler:2008:BioNLP,
  author    = {Kilicoglu, Halil  and  Bergler, Sabine},
  title     = {Recognizing Speculative Language in Biomedical Research Articles: A Linguistically Motivated Perspective},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {46--53},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0607}
}

@InProceedings{corbett-copestake:2008:BioNLP,
  author    = {Corbett, Peter  and  Copestake, Ann},
  title     = {Cascaded Classifiers for Confidence-Based Chemical Named Entity Recognition},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {54--62},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0608}
}

@InProceedings{sasaki-EtAl:2008:BioNLP,
  author    = {Sasaki, Yutaka  and  Tsuruoka, Yoshimasa  and  McNaught, John  and  Ananiadou, Sophia},
  title     = {How to Make the Most of NE Dictionaries in Statistical NER},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {63--70},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0609}
}

@InProceedings{wang-matthews:2008:BioNLP,
  author    = {Wang, Xinglong  and  Matthews, Michael},
  title     = {Species Disambiguation for Biomedical Term Identification},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {71--79},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0610}
}

@InProceedings{stevenson-EtAl:2008:BioNLP,
  author    = {Stevenson, Mark  and  Guo, Yinkun  and  Gaizauskas, Robert  and  Martinez, David},
  title     = {Knowledge Sources for Word Sense Disambiguation of Biomedical Text},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {80--87},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0611}
}

@InProceedings{neveol-shooshan-claveau:2008:BioNLP,
  author    = {Neveol, Aurelie  and  Shooshan, Sonya  and  Claveau, Vincent},
  title     = {Automatic inference of indexing rules for MEDLINE},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {88--89},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0612}
}

@InProceedings{chun-EtAl:2008:BioNLP,
  author    = {Chun, Hong-Woo  and  Yamasaki, Chisato  and  Saichi, Naomi  and  Tanaka, Masayuki  and  Hishiki, Teruyoshi  and  Imanishi, Tadashi  and  Gojobori, Takashi  and  Kim, Jin-Dong  and  Tsujii, Jun'ichi  and  Takagi, Toshihisa},
  title     = {Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {90--91},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0613}
}

@InProceedings{yu-EtAl:2008:BioNLP,
  author    = {Yu, Hong  and  Frid, Nadya  and  McRoy, Susan  and  Prasad, Rashmi  and  Lee, Alan  and  Joshi, Aravind},
  title     = {A Pilot Annotation to Investigate Discourse Connectivity in Biomedical Text},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {92--93},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0614}
}

@InProceedings{li-savova-kipperschuler:2008:BioNLP,
  author    = {Li, Dingcheng  and  Savova, Guergana  and  Kipper-Schuler, Karin},
  title     = {Conditional Random Fields and Support Vector Machines for Disorder Named Entity Recognition in Clinical Texts},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {94--95},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0615}
}

@InProceedings{pestian-EtAl:2008:BioNLP,
  author    = {Pestian, John  and  Matykiewicz, Pawel  and  Grupp-Phelan, Jacqueline  and  Arszman Lavanier, Sarah  and  Combs, Jennifer  and  Kowatch, Robert},
  title     = {Using Natural Language Processing to Classify Suicide Notes},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {96--97},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0616}
}

@InProceedings{zhou-he:2008:BioNLP,
  author    = {Zhou, Deyu  and  He, Yulan},
  title     = {Extracting Protein-Protein Interaction based on Discriminative Training of the Hidden Vector State Model},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {98--99},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0617}
}

@InProceedings{segurabedmar-martinez-samy:2008:BioNLP,
  author    = {Segura-Bedmar, Isabel  and  Mart\'{i}nez, Paloma  and  Samy, Doaa},
  title     = {A preliminary approach to extract drugs by combining UMLS resources and USAN naming conventions},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {100--101},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0618}
}

@InProceedings{wang-patrick:2008:BioNLP,
  author    = {Wang, Yefeng  and  Patrick, Jon},
  title     = {Mapping Clinical Notes to Medical Terminologies at Point of Care},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {102--103},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0619}
}

@InProceedings{bloodgood-vijayshanker:2008:BioNLP,
  author    = {Bloodgood, Michael  and  Vijay-Shanker, K},
  title     = {An Approach to Reducing Annotation Costs for BioNLP},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {104--105},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0620}
}

@InProceedings{mowery-harkema-chapman:2008:BioNLP,
  author    = {Mowery, Danielle  and  Harkema, Henk  and  Chapman, Wendy},
  title     = {Temporal Annotation of Clinical Text},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {106--107},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0621}
}

@InProceedings{neves-EtAl:2008:BioNLP,
  author    = {Neves, Mariana  and  Chagoyen, Monica  and  Carazo, Jos\'{e} Mar\'{i}a  and  Pascual-Montano, Alberto},
  title     = {CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {108--109},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0622}
}

@InProceedings{frunza-inkpen:2008:BioNLP,
  author    = {Frunza, Oana  and  Inkpen, Diana},
  title     = {Textual Information for Predicting Functional Properties of the Genes},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {110--111},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0623}
}

@InProceedings{vanderhorn-EtAl:2008:BioNLP,
  author    = {van der Horn, Pieter  and  Bakker, Bart  and  Geleijnse, Gijs  and  Korst, Jan  and  Kurkin, Sergei},
  title     = {Determining causal and non-causal relationships in biomedical text by classifying verbs using a Naive Bayesian Classifier},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {112--113},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0624}
}

@InProceedings{buitelaar-oezdenwennerberg-zillner:2008:BioNLP,
  author    = {Buitelaar, Paul  and  Oezden Wennerberg, Pinar  and  Zillner, Sonja},
  title     = {Statistical Term Profiling for Query Pattern Mining},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {114--115},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0625}
}

@InProceedings{solorio-liu:2008:BioNLP,
  author    = {Solorio, Thamar  and  Liu, Yang},
  title     = {Using Language Models to Identify Language Impairment in Spanish-English Bilingual Children},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {116--117},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0626}
}

@InProceedings{wang-EtAl:2008:BioNLP,
  author    = {Wang, Yue  and  Yoshida, Kazuhiro  and  Kim, Jin-Dong  and  Saetre, Rune  and  Tsujii, Jun'ichi},
  title     = {Raising the Compatibility of Heterogeneous Annotations: A Case Study on},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {118--119},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0627}
}

@InProceedings{feng-burns-hovy:2008:BioNLP,
  author    = {Feng, Donghui  and  Burns, Gully  and  Hovy, Eduard},
  title     = {Adaptive Information Extraction for Complex Biomedical Tasks},
  booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
  month     = {June},
  year      = {2008},
  address   = {Columbus, Ohio},
  publisher = {Association for Computational Linguistics},
  pages     = {120--121},
  url       = {http://www.aclweb.org/anthology/W/W08/W08-0628}
}