@Book{BioNLP:2010,
  editor    = {K. Bretonnel Cohen  and  Dina Demner-Fushman  and  Sophia Ananiadou  and  John Pestian  and  Jun'ichi Tsujii  and  Bonnie Webber},
  title     = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  url       = {http://www.aclweb.org/anthology/W10-19}
}

@InProceedings{vlachos:2010:BioNLP,
  author    = {Vlachos, Andreas},
  title     = {Two Strong Baselines for the BioNLP 2009 Event Extraction Task},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {1--9},
  url       = {http://www.aclweb.org/anthology/W10-1901}
}

@InProceedings{liu-huang-zhu:2010:BioNLP,
  author    = {Liu, Jingchen  and  Huang, Minlie  and  Zhu, Xiaoyan},
  title     = {Recognizing Biomedical Named Entities Using Skip-Chain Conditional Random Fields},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {10--18},
  url       = {http://www.aclweb.org/anthology/W10-1902}
}

@InProceedings{ohta-EtAl:2010:BioNLP,
  author    = {Ohta, Tomoko  and  Pyysalo, Sampo  and  Miwa, Makoto  and  Kim, Jin-Dong  and  Tsujii, Jun'ichi},
  title     = {Event Extraction for Post-Translational Modifications},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {19--27},
  url       = {http://www.aclweb.org/anthology/W10-1903}
}

@InProceedings{bjorne-EtAl:2010:BioNLP,
  author    = {Bj\"{o}rne, Jari  and  Ginter, Filip  and  Pyysalo, Sampo  and  Tsujii, Jun'ichi  and  Salakoski, Tapio},
  title     = {Scaling up Biomedical Event Extraction to the Entire PubMed},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {28--36},
  url       = {http://www.aclweb.org/anthology/W10-1904}
}

@InProceedings{miwa-EtAl:2010:BioNLP,
  author    = {Miwa, Makoto  and  Pyysalo, Sampo  and  Hara, Tadayoshi  and  Tsujii, Jun'ichi},
  title     = {A Comparative Study of Syntactic Parsers for Event Extraction},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {37--45},
  url       = {http://www.aclweb.org/anthology/W10-1905}
}

@InProceedings{kilicoglu-EtAl:2010:BioNLP,
  author    = {Kilicoglu, Halil  and  Fiszman, Marcelo  and  Rosemblat, Graciela  and  Marimpietri, Sean  and  Rindflesch, Thomas},
  title     = {Arguments of Nominals in Semantic Interpretation of Biomedical Text},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {46--54},
  url       = {http://www.aclweb.org/anthology/W10-1906}
}

@InProceedings{plaza-stevenson-diaz:2010:BioNLP,
  author    = {Plaza, Laura  and  Stevenson, Mark  and  D\'{i}az, Alberto},
  title     = {Improving Summarization of Biomedical Documents Using Word Sense Disambiguation},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {55--63},
  url       = {http://www.aclweb.org/anthology/W10-1907}
}

@InProceedings{jha-elhadad:2010:BioNLP,
  author    = {Jha, Mukund  and  Elhadad, Noemie},
  title     = {Cancer Stage Prediction Based on Patient Online Discourse},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {64--71},
  url       = {http://www.aclweb.org/anthology/W10-1908}
}

@InProceedings{gerner-nenadic-bergman:2010:BioNLP,
  author    = {Gerner, Martin  and  Nenadic, Goran  and  Bergman, Casey M.},
  title     = {An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {72--80},
  url       = {http://www.aclweb.org/anthology/W10-1909}
}

@InProceedings{apostolova-tomuro:2010:BioNLP,
  author    = {Apostolova, Emilia  and  Tomuro, Noriko},
  title     = {Exploring Surface-Level Heuristics for Negation and Speculation Discovery in Clinical Texts},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {81--82},
  url       = {http://www.aclweb.org/anthology/W10-1910}
}

@InProceedings{chowdhury-lavelli:2010:BioNLP,
  author    = {Chowdhury, Md. Faisal Mahbub  and  Lavelli, Alberto},
  title     = {Disease Mention Recognition with Specific Features},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {83--90},
  url       = {http://www.aclweb.org/anthology/W10-1911}
}

@InProceedings{frunza-inkpen:2010:BioNLP,
  author    = {Frunza, Oana  and  Inkpen, Diana},
  title     = {Extraction of Disease-Treatment Semantic Relations from Biomedical Sentences},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {91--98},
  url       = {http://www.aclweb.org/anthology/W10-1912}
}

@InProceedings{guo-EtAl:2010:BioNLP,
  author    = {Guo, Yufan  and  Korhonen, Anna  and  Liakata, Maria  and  Silins, Ilona  and  Sun, Lin  and  Stenius, Ulla},
  title     = {Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {99--107},
  url       = {http://www.aclweb.org/anthology/W10-1913}
}

@InProceedings{heimonen-bjorne-salakoski:2010:BioNLP,
  author    = {Heimonen, Juho  and  Bj\"{o}rne, Jari  and  Salakoski, Tapio},
  title     = {Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {108--116},
  url       = {http://www.aclweb.org/anthology/W10-1914}
}

@InProceedings{leaman-EtAl:2010:BioNLP,
  author    = {Leaman, Robert  and  Wojtulewicz, Laura  and  Sullivan, Ryan  and  Skariah, Annie  and  Yang, Jian  and  Gonzalez, Graciela},
  title     = {Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {117--125},
  url       = {http://www.aclweb.org/anthology/W10-1915}
}

@InProceedings{morante:2010:BioNLP,
  author    = {Morante, Roser},
  title     = {Semantic Role Labeling of Gene Regulation Events: Preliminary Results},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {126--127},
  url       = {http://www.aclweb.org/anthology/W10-1916}
}

@InProceedings{naderi-witte:2010:BioNLP,
  author    = {Naderi, Nona  and  Witte, Ren\'{e}},
  title     = {Ontology-Based Extraction and Summarization of Protein Mutation Impact Information},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {128--129},
  url       = {http://www.aclweb.org/anthology/W10-1917}
}

@InProceedings{park-choi:2010:BioNLP,
  author    = {Park, Heekyong  and  Choi, Jinwook},
  title     = {Extracting Distinctive Features of Swine (H1N1) Flu through Data Mining Clinical Documents},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {130--131},
  url       = {http://www.aclweb.org/anthology/W10-1918}
}

@InProceedings{pyysalo-EtAl:2010:BioNLP,
  author    = {Pyysalo, Sampo  and  Ohta, Tomoko  and  Cho, Han-Cheol  and  Sullivan, Dan  and  Mao, Chunhong  and  Sobral, Bruno  and  Tsujii, Jun'ichi  and  Ananiadou, Sophia},
  title     = {Towards Event Extraction from Full Texts on Infectious Diseases},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {132--140},
  url       = {http://www.aclweb.org/anthology/W10-1919}
}

@InProceedings{stubbs-harshfield:2010:BioNLP,
  author    = {Stubbs, Amber  and  Harshfield, Benjamin},
  title     = {Applying the TARSQI Toolkit to Augment Text Mining of EHRs},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {141--143},
  url       = {http://www.aclweb.org/anthology/W10-1920}
}

@InProceedings{vanlandeghem-EtAl:2010:BioNLP,
  author    = {Van Landeghem, Sofie  and  Pyysalo, Sampo  and  Ohta, Tomoko  and  Van de Peer, Yves},
  title     = {Integration of Static Relations to Enhance Event Extraction from Text},
  booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing},
  month     = {July},
  year      = {2010},
  address   = {Uppsala, Sweden},
  publisher = {Association for Computational Linguistics},
  pages     = {144--152},
  url       = {http://www.aclweb.org/anthology/W10-1921}
}