Proceedings of the 2010 Workshop on Biomedical Natural Language Processing K. BretonnelCohen DinaDemner-Fushman SophiaAnaniadou JohnPestian Jun’ichiTsujii BonnieWebber July 2010
Uppsala, Sweden
Association for Computational Linguistics http://www.aclweb.org/anthology/W10-19 book BioNLP:2010 Two Strong Baselines for the BioNLP 2009 Event Extraction Task AndreasVlachos Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 1–9 http://www.aclweb.org/anthology/W10-1901 inproceedings vlachos:2010:BioNLP Recognizing Biomedical Named Entities Using Skip-Chain Conditional Random Fields JingchenLiu MinlieHuang XiaoyanZhu Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 10–18 http://www.aclweb.org/anthology/W10-1902 inproceedings liu-huang-zhu:2010:BioNLP Event Extraction for Post-Translational Modifications TomokoOhta SampoPyysalo MakotoMiwa Jin-DongKim Jun’ichiTsujii Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 19–27 http://www.aclweb.org/anthology/W10-1903 inproceedings ohta-EtAl:2010:BioNLP Scaling up Biomedical Event Extraction to the Entire PubMed JariBjörne FilipGinter SampoPyysalo Jun’ichiTsujii TapioSalakoski Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 28–36 http://www.aclweb.org/anthology/W10-1904 inproceedings bjorne-EtAl:2010:BioNLP A Comparative Study of Syntactic Parsers for Event Extraction MakotoMiwa SampoPyysalo TadayoshiHara Jun’ichiTsujii Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 37–45 http://www.aclweb.org/anthology/W10-1905 inproceedings miwa-EtAl:2010:BioNLP Arguments of Nominals in Semantic Interpretation of Biomedical Text HalilKilicoglu MarceloFiszman GracielaRosemblat SeanMarimpietri ThomasRindflesch Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 46–54 http://www.aclweb.org/anthology/W10-1906 inproceedings kilicoglu-EtAl:2010:BioNLP Improving Summarization of Biomedical Documents Using Word Sense Disambiguation LauraPlaza MarkStevenson AlbertoDíaz Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 55–63 http://www.aclweb.org/anthology/W10-1907 inproceedings plaza-stevenson-diaz:2010:BioNLP Cancer Stage Prediction Based on Patient Online Discourse MukundJha NoemieElhadad Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 64–71 http://www.aclweb.org/anthology/W10-1908 inproceedings jha-elhadad:2010:BioNLP An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text MartinGerner GoranNenadic Casey M.Bergman Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 72–80 http://www.aclweb.org/anthology/W10-1909 inproceedings gerner-nenadic-bergman:2010:BioNLP Exploring Surface-Level Heuristics for Negation and Speculation Discovery in Clinical Texts EmiliaApostolova NorikoTomuro Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 81–82 http://www.aclweb.org/anthology/W10-1910 inproceedings apostolova-tomuro:2010:BioNLP Disease Mention Recognition with Specific Features Md. Faisal MahbubChowdhury AlbertoLavelli Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 83–90 http://www.aclweb.org/anthology/W10-1911 inproceedings chowdhury-lavelli:2010:BioNLP Extraction of Disease-Treatment Semantic Relations from Biomedical Sentences OanaFrunza DianaInkpen Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 91–98 http://www.aclweb.org/anthology/W10-1912 inproceedings frunza-inkpen:2010:BioNLP Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes YufanGuo AnnaKorhonen MariaLiakata IlonaSilins LinSun UllaStenius Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 99–107 http://www.aclweb.org/anthology/W10-1913 inproceedings guo-EtAl:2010:BioNLP Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain JuhoHeimonen JariBjörne TapioSalakoski Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 108–116 http://www.aclweb.org/anthology/W10-1914 inproceedings heimonen-bjorne-salakoski:2010:BioNLP Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks RobertLeaman LauraWojtulewicz RyanSullivan AnnieSkariah JianYang GracielaGonzalez Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 117–125 http://www.aclweb.org/anthology/W10-1915 inproceedings leaman-EtAl:2010:BioNLP Semantic Role Labeling of Gene Regulation Events: Preliminary Results RoserMorante Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 126–127 http://www.aclweb.org/anthology/W10-1916 inproceedings morante:2010:BioNLP Ontology-Based Extraction and Summarization of Protein Mutation Impact Information NonaNaderi RenéWitte Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 128–129 http://www.aclweb.org/anthology/W10-1917 inproceedings naderi-witte:2010:BioNLP Extracting Distinctive Features of Swine (H1N1) Flu through Data Mining Clinical Documents HeekyongPark JinwookChoi Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 130–131 http://www.aclweb.org/anthology/W10-1918 inproceedings park-choi:2010:BioNLP Towards Event Extraction from Full Texts on Infectious Diseases SampoPyysalo TomokoOhta Han-CheolCho DanSullivan ChunhongMao BrunoSobral Jun’ichiTsujii SophiaAnaniadou Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 132–140 http://www.aclweb.org/anthology/W10-1919 inproceedings pyysalo-EtAl:2010:BioNLP Applying the TARSQI Toolkit to Augment Text Mining of EHRs AmberStubbs BenjaminHarshfield Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 141–143 http://www.aclweb.org/anthology/W10-1920 inproceedings stubbs-harshfield:2010:BioNLP Integration of Static Relations to Enhance Event Extraction from Text SofieVan Landeghem SampoPyysalo TomokoOhta YvesVan de Peer Proceedings of the 2010 Workshop on Biomedical Natural Language Processing July 2010
Uppsala, Sweden
Association for Computational Linguistics 144–152 http://www.aclweb.org/anthology/W10-1921 inproceedings vanlandeghem-EtAl:2010:BioNLP