Proceedings of BioNLP 2011 Workshop Kevin BretonnelCohen DinaDemner-Fushman SophiaAnaniadou JohnPestian Jun'ichiTsujii BonnieWebber June 2011
Portland, Oregon, USA
Association for Computational Linguistics http://www.aclweb.org/anthology/W11-02 book BioNLP:2011 Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text PhilippeThomas StefanPietschmann IllèsSolt DomonkosTikk UlfLeser Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 1–9 http://www.aclweb.org/anthology/W11-0201 inproceedings thomas-EtAl:2011:BioNLP Unsupervised Entailment Detection between Dependency Graph Fragments MarekRei TedBriscoe Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 10–18 http://www.aclweb.org/anthology/W11-0202 inproceedings rei-briscoe:2011:BioNLP Learning Phenotype Mapping for Integrating Large Genetic Data Chun-NanHsu Cheng-JuKuo CongxingCai SarahPendergrass MarylynRitchie Jose LuisAmbite Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 19–27 http://www.aclweb.org/anthology/W11-0203 inproceedings hsu-EtAl:2011:BioNLP EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions SofieVan Landeghem FilipGinter YvesVan de Peer TapioSalakoski Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 28–37 http://www.aclweb.org/anthology/W11-0204 inproceedings vanlandeghem-EtAl:2011:BioNLP Fast and simple semantic class assignment for biomedical text K. BretonnelCohen ThomasChristiansen WilliamBaumgartner Jr. KarinVerspoor LawrenceHunter Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 38–45 http://www.aclweb.org/anthology/W11-0205 inproceedings cohen-EtAl:2011:BioNLP The Role of Information Extraction in the Design of a Document Triage Application for Biocuration SandeepPokkunuri CarticRamakrishnan EllenRiloff EduardHovy GullyBurns Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 46–55 http://www.aclweb.org/anthology/W11-0206 inproceedings pokkunuri-EtAl:2011:BioNLP Medical Entity Recognition: A Comparaison of Semantic and Statistical Methods AsmaBen Abacha PierreZweigenbaum Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 56–64 http://www.aclweb.org/anthology/W11-0207 inproceedings benabacha-zweigenbaum:2011:BioNLP Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition YuUsami Han-CheolCho NaoakiOkazaki Jun'ichiTsujii Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 65–73 http://www.aclweb.org/anthology/W11-0208 inproceedings usami-EtAl:2011:BioNLP Building frame-based corpus on the basis of ontological domain knowledge HeTan RajaramKaliyaperumal NirupamaBenis Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 74–82 http://www.aclweb.org/anthology/W11-0209 inproceedings tan-kaliyaperumal-benis:2011:BioNLP Building a Coreference-Annotated Corpus from the Domain of Biochemistry Riza TheresaBatista-Navarro SophiaAnaniadou Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 83–91 http://www.aclweb.org/anthology/W11-0210 inproceedings batistanavarro-ananiadou:2011:BioNLP Towards Morphologically Annotated Corpus of Hospital Discharge Reports in Polish MalgorzataMarciniak AgnieszkaMykowiecka Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 92–100 http://www.aclweb.org/anthology/W11-0211 inproceedings marciniak-mykowiecka:2011:BioNLP In Search of Protein Locations CatherineBlake WuZheng Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 101–102 http://www.aclweb.org/anthology/W11-0212 inproceedings blake-zheng:2011:BioNLP Automatic extraction of data deposition statements: where do the research results go? AurelieNeveol W. JohnWilbur ZhiyongLu Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 103–104 http://www.aclweb.org/anthology/W11-0213 inproceedings neveol-wilbur-lu:2011:BioNLP From Pathways to Biomolecular Events: Opportunities and Challenges TomokoOhta SampoPyysalo Jun'ichiTsujii Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 105–113 http://www.aclweb.org/anthology/W11-0214 inproceedings ohta-pyysalo-tsujii:2011:BioNLP Towards Exhaustive Event Extraction for Protein Modifications SampoPyysalo TomokoOhta MakotoMiwa Jun'ichiTsujii Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 114–123 http://www.aclweb.org/anthology/W11-0215 inproceedings pyysalo-EtAl:2011:BioNLP A Study on Dependency Tree Kernels for Automatic Extraction of Protein-Protein Interaction Faisal Md.Chowdhury AlbertoLavelli AlessandroMoschitti Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 124–133 http://www.aclweb.org/anthology/W11-0216 inproceedings chowdhury-lavelli-moschitti:2011:BioNLP Hypothesis and Evidence Extraction from Full-Text Scientific Journal Articles ElizabethWhite K. BretonnelCohen LarryHunter Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 134–135 http://www.aclweb.org/anthology/W11-0217 inproceedings white-cohen-hunter:2011:BioNLP SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation PontusStenetorp SampoPyysalo Jun'ichiTsujii Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 136–145 http://www.aclweb.org/anthology/W11-0218 inproceedings stenetorp-pyysalo-tsujii:2011:BioNLP Building Timelines from Narrative Clinical Records: Initial Results Based-on Deep Natural Language Understanding HyuckchulJung JamesAllen NateBlaylock Williamde Beaumont LucianGalescu MarySwift Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 146–154 http://www.aclweb.org/anthology/W11-0219 inproceedings jung-EtAl:2011:BioNLP Text Mining Techniques for Leveraging Positively Labeled Data LanaYeganova Donald C.Comeau WonKim W. JohnWilbur Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 155–163 http://www.aclweb.org/anthology/W11-0220 inproceedings yeganova-EtAl:2011:BioNLP Parsing Natural Language Queries for Life Science Knowledge TadayoshiHara YukaTateisi Jin-DongKim YusukeMiyao Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 164–173 http://www.aclweb.org/anthology/W11-0221 inproceedings hara-EtAl:2011:BioNLP Unlocking Medical Ontologies for Non-Ontology Experts Shao FenLiang DoniaScott RobertStevens AlanRector Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 174–181 http://www.aclweb.org/anthology/W11-0222 inproceedings liang-EtAl:2011:BioNLP Self-training and co-training in biomedical word sense disambiguation AntonioJimeno Yepes AlanAronson Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 182–183 http://www.aclweb.org/anthology/W11-0223 inproceedings jimenoyepes-aronson:2011:BioNLP Medstract - The Next Generation MarcVerhagen JamesPustejovsky Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 184–185 http://www.aclweb.org/anthology/W11-0224 inproceedings verhagen-pustejovsky:2011:BioNLP ThaiHerbMiner: A Thai Herbal Medicine Mining and Visualizing Tool ChoochartHaruechaiyasak JaruwatPailai WasnaViratyosin RachadaKongkachandra Proceedings of BioNLP 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 186–187 http://www.aclweb.org/anthology/W11-0225 inproceedings haruechaiyasak-EtAl:2011:BioNLP