@Book{BioNLP-ST:2011,
  editor    = {Jun'ichi Tsujii  and  Jin-Dong Kim  and  Sampo Pyysalo},
  title     = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  url       = {http://www.aclweb.org/anthology/W11-18}
}

@InProceedings{kim-EtAl:2011:BioNLP-ST1,
  author    = {Kim, Jin-Dong  and  Pyysalo, Sampo  and  Ohta, Tomoko  and  Bossy, Robert  and  Nguyen, Ngan  and  Tsujii, Jun'ichi},
  title     = {Overview of BioNLP Shared Task 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {1--6},
  url       = {http://www.aclweb.org/anthology/W11-1801}
}

@InProceedings{kim-EtAl:2011:BioNLP-ST2,
  author    = {Kim, Jin-Dong  and  Wang, Yue  and  Takagi, Toshihisa  and  Yonezawa, Akinori},
  title     = {Overview of Genia Event Task in BioNLP Shared Task 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {7--15},
  url       = {http://www.aclweb.org/anthology/W11-1802}
}

@InProceedings{ohta-pyysalo-tsujii:2011:BioNLP-ST,
  author    = {Ohta, Tomoko  and  Pyysalo, Sampo  and  Tsujii, Jun'ichi},
  title     = {Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {16--25},
  url       = {http://www.aclweb.org/anthology/W11-1803}
}

@InProceedings{pyysalo-EtAl:2011:BioNLP-ST,
  author    = {Pyysalo, Sampo  and  Ohta, Tomoko  and  Rak, Rafal  and  Sullivan, Dan  and  Mao, Chunhong  and  Wang, Chunxia  and  Sobral, Bruno  and  Tsujii, Jun'ichi  and  Ananiadou, Sophia},
  title     = {Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {26--35},
  url       = {http://www.aclweb.org/anthology/W11-1804}
}

@InProceedings{vlachos-craven:2011:BioNLP-ST,
  author    = {Vlachos, Andreas  and  Craven, Mark},
  title     = {Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {36--40},
  url       = {http://www.aclweb.org/anthology/W11-1805}
}

@InProceedings{mcclosky-surdeanu-manning:2011:BioNLP-ST,
  author    = {McClosky, David  and  Surdeanu, Mihai  and  Manning, Christopher},
  title     = {Event Extraction as Dependency Parsing for BioNLP 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {41--45},
  url       = {http://www.aclweb.org/anthology/W11-1806}
}

@InProceedings{riedel-mccallum:2011:BioNLP-ST,
  author    = {Riedel, Sebastian  and  McCallum, Andrew},
  title     = {Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {46--50},
  url       = {http://www.aclweb.org/anthology/W11-1807}
}

@InProceedings{riedel-EtAl:2011:BioNLP-ST,
  author    = {Riedel, Sebastian  and  McClosky, David  and  Surdeanu, Mihai  and  McCallum, Andrew  and  D. Manning, Christopher},
  title     = {Model Combination for Event Extraction in BioNLP 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {51--55},
  url       = {http://www.aclweb.org/anthology/W11-1808}
}

@InProceedings{bossy-EtAl:2011:BioNLP-ST,
  author    = {Bossy, Robert  and  Jourde, Julien  and  Bessi\`{e}res, Philippe  and  van de Guchte, Maarten  and  N\'{e}dellec, Claire},
  title     = {BioNLP Shared Task 2011 - Bacteria Biotope},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {56--64},
  url       = {http://www.aclweb.org/anthology/W11-1809}
}

@InProceedings{jourde-EtAl:2011:BioNLP-ST,
  author    = {Jourde, Julien  and  Manine, Alain-Pierre  and  Veber, Philippe  and  Fort, Kar\"{e}n  and  Bossy, Robert  and  Alphonse, Erick  and  Bessi\`{e}res, Philippe},
  title     = {BioNLP Shared Task 2011 -- Bacteria Gene Interactions and Renaming},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {65--73},
  url       = {http://www.aclweb.org/anthology/W11-1810}
}

@InProceedings{nguyen-kim-tsujii:2011:BioNLP-ST,
  author    = {Nguyen, Ngan  and  Kim, Jin-Dong  and  Tsujii, Jun'ichi},
  title     = {Overview of BioNLP 2011 Protein Coreference Shared Task},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {74--82},
  url       = {http://www.aclweb.org/anthology/W11-1811}
}

@InProceedings{pyysalo-ohta-tsujii:2011:BioNLP-ST,
  author    = {Pyysalo, Sampo  and  Ohta, Tomoko  and  Tsujii, Jun'ichi},
  title     = {Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {83--88},
  url       = {http://www.aclweb.org/anthology/W11-1812}
}

@InProceedings{kim-riloff-gilbert:2011:BioNLP-ST,
  author    = {Kim, Youngjun  and  Riloff, Ellen  and  Gilbert, Nathan},
  title     = {The Taming of Reconcile as a Biomedical Coreference Resolver},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {89--93},
  url       = {http://www.aclweb.org/anthology/W11-1813}
}

@InProceedings{nguyen-tsuruoka:2011:BioNLP-ST,
  author    = {Nguyen, Nhung T. H.  and  Tsuruoka, Yoshimasa},
  title     = {Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {94--101},
  url       = {http://www.aclweb.org/anthology/W11-1814}
}

@InProceedings{ratkovic-EtAl:2011:BioNLP-ST,
  author    = {Ratkovic, Zorana  and  Golik, Wiktoria  and  Warnier, Pierre  and  Veber, Philippe  and  N\'{e}dellec, Claire},
  title     = {BioNLP 2011 Task Bacteria Biotope -- The Alvis system},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {102--111},
  url       = {http://www.aclweb.org/anthology/W11-1815}
}

@InProceedings{stenetorp-EtAl:2011:BioNLP-ST,
  author    = {Stenetorp, Pontus  and  Topi\'{c}, Goran  and  Pyysalo, Sampo  and  Ohta, Tomoko  and  Kim, Jin-Dong  and  Tsujii, Jun'ichi},
  title     = {BioNLP Shared Task 2011: Supporting Resources},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {112--120},
  url       = {http://www.aclweb.org/anthology/W11-1816}
}

@InProceedings{warnier-nedellec:2011:BioNLP-ST,
  author    = {Warnier, Pierre  and  N\'{e}dellec, Claire},
  title     = {Sentence Filtering for BioNLP: Searching for Renaming Acts},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {121--129},
  url       = {http://www.aclweb.org/anthology/W11-1817}
}

@InProceedings{rmcgrath-EtAl:2011:BioNLP-ST,
  author    = {R. McGrath, Liam  and  Domico, Kelly  and  D. Corley, Courtney  and  Webb-Robertson, Bobbie-Jo},
  title     = {Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {130--137},
  url       = {http://www.aclweb.org/anthology/W11-1818}
}

@InProceedings{casillas-EtAl:2011:BioNLP-ST,
  author    = {Casillas, Arantza  and  D\'{i}az de Ilarraza, Arantza  and  Gojenola, Koldo  and  Oronoz, Maite  and  Rigau, German},
  title     = {Using Kybots for Extracting Events in Biomedical Texts},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {138--142},
  url       = {http://www.aclweb.org/anthology/W11-1819}
}

@InProceedings{bui-sloot:2011:BioNLP-ST,
  author    = {Bui, Quoc-Chinh  and  Sloot, Peter. M.A.},
  title     = {Extracting Biological Events from Text Using Simple Syntactic Patterns},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {143--146},
  url       = {http://www.aclweb.org/anthology/W11-1820}
}

@InProceedings{vanlandeghem-EtAl:2011:BioNLP-ST,
  author    = {Van Landeghem, Sofie  and  Abeel, Thomas  and  De Baets, Bernard  and  Van de Peer, Yves},
  title     = {Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {147--148},
  url       = {http://www.aclweb.org/anthology/W11-1821}
}

@InProceedings{leminh-nguyentruong-hobao:2011:BioNLP-ST,
  author    = {Le Minh, Quang  and  Nguyen Truong, Son  and  Ho Bao, Quoc},
  title     = {A Pattern Approach for Biomedical Event Annotation},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {149--150},
  url       = {http://www.aclweb.org/anthology/W11-1822}
}

@InProceedings{tuggener-EtAl:2011:BioNLP-ST,
  author    = {Tuggener, Don  and  Klenner, Manfred  and  Schneider, Gerold  and  Clematide, Simon  and  Rinaldi, Fabio},
  title     = {An Incremental Model for the Coreference Resolution Task of BioNLP 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {151--152},
  url       = {http://www.aclweb.org/anthology/W11-1823}
}

@InProceedings{emadzadeh-nikfarjam-gonzalez:2011:BioNLP-ST,
  author    = {Emadzadeh, Ehsan  and  Nikfarjam, Azadeh  and  Gonzalez, Graciela},
  title     = {Double Layered Learning for Biological Event Extraction from Text},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {153--154},
  url       = {http://www.aclweb.org/anthology/W11-1824}
}

@InProceedings{quirk-EtAl:2011:BioNLP-ST,
  author    = {Quirk, Chris  and  Choudhury, Pallavi  and  Gamon, Michael  and  Vanderwende, Lucy},
  title     = {MSR-NLP Entry in BioNLP Shared Task 2011},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {155--163},
  url       = {http://www.aclweb.org/anthology/W11-1825}
}

@InProceedings{liu-komandur-verspoor:2011:BioNLP-ST,
  author    = {Liu, Haibin  and  Komandur, Ravikumar  and  Verspoor, Karin},
  title     = {From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {164--172},
  url       = {http://www.aclweb.org/anthology/W11-1826}
}

@InProceedings{kilicoglu-bergler:2011:BioNLP-ST,
  author    = {Kilicoglu, Halil  and  Bergler, Sabine},
  title     = {Adapting a General Semantic Interpretation Approach to Biological Event Extraction},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {173--182},
  url       = {http://www.aclweb.org/anthology/W11-1827}
}

@InProceedings{bjorne-salakoski:2011:BioNLP-ST,
  author    = {Bj\"{o}rne, Jari  and  Salakoski, Tapio},
  title     = {Generalizing Biomedical Event Extraction},
  booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop},
  month     = {June},
  year      = {2011},
  address   = {Portland, Oregon, USA},
  publisher = {Association for Computational Linguistics},
  pages     = {183--191},
  url       = {http://www.aclweb.org/anthology/W11-1828}
}