Proceedings of BioNLP Shared Task 2011 Workshop Jun'ichiTsujii Jin-DongKim SampoPyysalo June 2011
Portland, Oregon, USA
Association for Computational Linguistics http://www.aclweb.org/anthology/W11-18 book BioNLP-ST:2011 Overview of BioNLP Shared Task 2011 Jin-DongKim SampoPyysalo TomokoOhta RobertBossy NganNguyen Jun'ichiTsujii Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 1–6 http://www.aclweb.org/anthology/W11-1801 inproceedings kim-EtAl:2011:BioNLP-ST1 Overview of Genia Event Task in BioNLP Shared Task 2011 Jin-DongKim YueWang ToshihisaTakagi AkinoriYonezawa Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 7–15 http://www.aclweb.org/anthology/W11-1802 inproceedings kim-EtAl:2011:BioNLP-ST2 Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011 TomokoOhta SampoPyysalo Jun'ichiTsujii Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 16–25 http://www.aclweb.org/anthology/W11-1803 inproceedings ohta-pyysalo-tsujii:2011:BioNLP-ST Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011 SampoPyysalo TomokoOhta RafalRak DanSullivan ChunhongMao ChunxiaWang BrunoSobral Jun'ichiTsujii SophiaAnaniadou Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 26–35 http://www.aclweb.org/anthology/W11-1804 inproceedings pyysalo-EtAl:2011:BioNLP-ST Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction AndreasVlachos MarkCraven Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 36–40 http://www.aclweb.org/anthology/W11-1805 inproceedings vlachos-craven:2011:BioNLP-ST Event Extraction as Dependency Parsing for BioNLP 2011 DavidMcClosky MihaiSurdeanu ChristopherManning Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 41–45 http://www.aclweb.org/anthology/W11-1806 inproceedings mcclosky-surdeanu-manning:2011:BioNLP-ST Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation SebastianRiedel AndrewMcCallum Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 46–50 http://www.aclweb.org/anthology/W11-1807 inproceedings riedel-mccallum:2011:BioNLP-ST Model Combination for Event Extraction in BioNLP 2011 SebastianRiedel DavidMcClosky MihaiSurdeanu AndrewMcCallum ChristopherD. Manning Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 51–55 http://www.aclweb.org/anthology/W11-1808 inproceedings riedel-EtAl:2011:BioNLP-ST BioNLP Shared Task 2011 - Bacteria Biotope RobertBossy JulienJourde PhilippeBessières Maartenvan de Guchte ClaireNèdellec Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 56–64 http://www.aclweb.org/anthology/W11-1809 inproceedings bossy-EtAl:2011:BioNLP-ST BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming JulienJourde Alain-PierreManine PhilippeVeber KarënFort RobertBossy ErickAlphonse PhilippeBessières Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 65–73 http://www.aclweb.org/anthology/W11-1810 inproceedings jourde-EtAl:2011:BioNLP-ST Overview of BioNLP 2011 Protein Coreference Shared Task NganNguyen Jin-DongKim Jun'ichiTsujii Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 74–82 http://www.aclweb.org/anthology/W11-1811 inproceedings nguyen-kim-tsujii:2011:BioNLP-ST Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011 SampoPyysalo TomokoOhta Jun'ichiTsujii Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 83–88 http://www.aclweb.org/anthology/W11-1812 inproceedings pyysalo-ohta-tsujii:2011:BioNLP-ST The Taming of Reconcile as a Biomedical Coreference Resolver YoungjunKim EllenRiloff NathanGilbert Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 89–93 http://www.aclweb.org/anthology/W11-1813 inproceedings kim-riloff-gilbert:2011:BioNLP-ST Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution Nhung T. H.Nguyen YoshimasaTsuruoka Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 94–101 http://www.aclweb.org/anthology/W11-1814 inproceedings nguyen-tsuruoka:2011:BioNLP-ST BioNLP 2011 Task Bacteria Biotope – The Alvis system ZoranaRatkovic WiktoriaGolik PierreWarnier PhilippeVeber ClaireNèdellec Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 102–111 http://www.aclweb.org/anthology/W11-1815 inproceedings ratkovic-EtAl:2011:BioNLP-ST BioNLP Shared Task 2011: Supporting Resources PontusStenetorp GoranTopić SampoPyysalo TomokoOhta Jin-DongKim Jun'ichiTsujii Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 112–120 http://www.aclweb.org/anthology/W11-1816 inproceedings stenetorp-EtAl:2011:BioNLP-ST Sentence Filtering for BioNLP: Searching for Renaming Acts PierreWarnier ClaireNèdellec Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 121–129 http://www.aclweb.org/anthology/W11-1817 inproceedings warnier-nedellec:2011:BioNLP-ST Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features LiamR. McGrath KellyDomico CourtneyD. Corley Bobbie-JoWebb-Robertson Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 130–137 http://www.aclweb.org/anthology/W11-1818 inproceedings rmcgrath-EtAl:2011:BioNLP-ST Using Kybots for Extracting Events in Biomedical Texts ArantzaCasillas ArantzaDìaz de Ilarraza KoldoGojenola MaiteOronoz GermanRigau Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 138–142 http://www.aclweb.org/anthology/W11-1819 inproceedings casillas-EtAl:2011:BioNLP-ST Extracting Biological Events from Text Using Simple Syntactic Patterns Quoc-ChinhBui Peter. M.A.Sloot Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 143–146 http://www.aclweb.org/anthology/W11-1820 inproceedings bui-sloot:2011:BioNLP-ST Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction SofieVan Landeghem ThomasAbeel BernardDe Baets YvesVan de Peer Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 147–148 http://www.aclweb.org/anthology/W11-1821 inproceedings vanlandeghem-EtAl:2011:BioNLP-ST A Pattern Approach for Biomedical Event Annotation QuangLe Minh SonNguyen Truong QuocHo Bao Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 149–150 http://www.aclweb.org/anthology/W11-1822 inproceedings leminh-nguyentruong-hobao:2011:BioNLP-ST An Incremental Model for the Coreference Resolution Task of BioNLP 2011 DonTuggener ManfredKlenner GeroldSchneider SimonClematide FabioRinaldi Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 151–152 http://www.aclweb.org/anthology/W11-1823 inproceedings tuggener-EtAl:2011:BioNLP-ST Double Layered Learning for Biological Event Extraction from Text EhsanEmadzadeh AzadehNikfarjam GracielaGonzalez Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 153–154 http://www.aclweb.org/anthology/W11-1824 inproceedings emadzadeh-nikfarjam-gonzalez:2011:BioNLP-ST MSR-NLP Entry in BioNLP Shared Task 2011 ChrisQuirk PallaviChoudhury MichaelGamon LucyVanderwende Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 155–163 http://www.aclweb.org/anthology/W11-1825 inproceedings quirk-EtAl:2011:BioNLP-ST From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text HaibinLiu RavikumarKomandur KarinVerspoor Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 164–172 http://www.aclweb.org/anthology/W11-1826 inproceedings liu-komandur-verspoor:2011:BioNLP-ST Adapting a General Semantic Interpretation Approach to Biological Event Extraction HalilKilicoglu SabineBergler Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 173–182 http://www.aclweb.org/anthology/W11-1827 inproceedings kilicoglu-bergler:2011:BioNLP-ST Generalizing Biomedical Event Extraction JariBjörne TapioSalakoski Proceedings of BioNLP Shared Task 2011 Workshop June 2011
Portland, Oregon, USA
Association for Computational Linguistics 183–191 http://www.aclweb.org/anthology/W11-1828 inproceedings bjorne-salakoski:2011:BioNLP-ST