BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin B. Cohen
Dina Demner-Fushman
Sophia Ananiadou
Bonnie Webber
Jun'ichi Tsujii
John Pestian
June
2012
Montrèal, Canada
Association for Computational Linguistics
http://www.aclweb.org/anthology/W12-24
book
BioNLP:2012
Graph-based alignment of narratives for automated neurological assessment
EmilyPrud'hommeaux
BrianRoark
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
1–10
http://www.aclweb.org/anthology/W12-2401
inproceedings
prudhommeaux-roark:2012:BioNLP
Bootstrapping Biomedical Ontologies for Scientific Text using NELL
DanaMovshovitz-Attias
WilliamW. Cohen
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
11–19
http://www.aclweb.org/anthology/W12-2402
inproceedings
movshovitzattias-wcohen:2012:BioNLP1
Semantic distance and terminology structuring methods for the detection of semantically close terms
MarieDupuch
LaëtitiaDupuch
ThierryHamon
NataliaGrabar
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
20–28
http://www.aclweb.org/anthology/W12-2403
inproceedings
dupuch-EtAl:2012:BioNLP
Temporal Classification of Medical Events
PreethiRaghavan
EricFosler-Lussier
AlbertLai
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
29–37
http://www.aclweb.org/anthology/W12-2404
inproceedings
raghavan-foslerlussier-lai:2012:BioNLP
Analyzing Patient Records to Establish If and When a Patient Suffered from a Medical Condition
JamesCogley
NicolaStokes
JoeCarthy
JohnDunnion
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
38–46
http://www.aclweb.org/anthology/W12-2405
inproceedings
cogley-EtAl:2012:BioNLP
Alignment-HMM-based Extraction of Abbreviations from Biomedical Text
DanaMovshovitz-Attias
WilliamW. Cohen
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
47–55
http://www.aclweb.org/anthology/W12-2406
inproceedings
movshovitzattias-wcohen:2012:BioNLP2
Medical diagnosis lost in translation – Analysis of uncertainty and negation expressions in English and Swedish clinical texts
Danielle L.Mowery
SumithraVelupillai
Wendy W.Chapman
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
56–64
http://www.aclweb.org/anthology/W12-2407
inproceedings
mowery-velupillai-chapman:2012:BioNLP
A Hybrid Stepwise Approach for De-identifying Person Names in Clinical Documents
OscarFerrandez
BrettSouth
ShuyingShen
StephaneMeystre
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
65–72
http://www.aclweb.org/anthology/W12-2408
inproceedings
ferrandez-EtAl:2012:BioNLP
Active Learning for Coreference Resolution
TimothyMiller
DmitriyDligach
GuerganaSavova
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
73–81
http://www.aclweb.org/anthology/W12-2409
inproceedings
miller-dligach-savova:2012:BioNLP
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
JariBjörne
SofieVan Landeghem
SampoPyysalo
TomokoOhta
FilipGinter
YvesVan de Peer
SophiaAnaniadou
TapioSalakoski
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
82–90
http://www.aclweb.org/anthology/W12-2410
inproceedings
bjorne-EtAl:2012:BioNLP
An improved corpus of disease mentions in PubMed citations
RezartaIslamaj Dogan
ZhiyongLu
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
91–99
http://www.aclweb.org/anthology/W12-2411
inproceedings
islamajdogan-lu:2012:BioNLP
New Resources and Perspectives for Biomedical Event Extraction
SampoPyysalo
PontusStenetorp
TomokoOhta
Jin-DongKim
SophiaAnaniadou
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
100–108
http://www.aclweb.org/anthology/W12-2412
inproceedings
pyysalo-EtAl:2012:BioNLP
Combining Compositionality and Pagerank for the Identification of Semantic Relations between Biomedical Words
ThierryHamon
ChristopherEngström
MouniraManser
ZinaBadji
NataliaGrabar
SergeiSilvestrov
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
109–117
http://www.aclweb.org/anthology/W12-2413
inproceedings
hamon-EtAl:2012:BioNLP
Domain Adaptation of Coreference Resolution for Radiology Reports
EmiliaApostolova
NorikoTomuro
PattanasakMongkolwat
DinaDemner-Fushman
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
118–121
http://www.aclweb.org/anthology/W12-2414
inproceedings
apostolova-EtAl:2012:BioNLP
What can NLP tell us about BioNLP?
AttapolThamrongrattanarit
MichaelShafir
MichaelCrivaro
BensiinBorukhov
MarieMeteer
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
122–129
http://www.aclweb.org/anthology/W12-2415
inproceedings
thamrongrattanarit-EtAl:2012:BioNLP
A Prototype Tool Set to Support Machine-Assisted Annotation
BrettSouth
ShuyingShen
JianweiLeng
TylerForbush
ScottDuVall
WendyChapman
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
130–139
http://www.aclweb.org/anthology/W12-2416
inproceedings
south-EtAl:2012:BioNLP
MedLingMap: A growing resource mapping the Bio-Medical NLP field
MarieMeteer
BorukhovBensiin
MikeCrivaro
MichaelShafir
AttapolThamrongrattanarit
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
140–145
http://www.aclweb.org/anthology/W12-2417
inproceedings
meteer-EtAl:2012:BioNLP
Exploring Label Dependency in Active Learning for Phenotype Mapping
ShefaliSharma
LeslieLange
Jose LuisAmbite
YigalArens
Chun-NanHsu
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
146–154
http://www.aclweb.org/anthology/W12-2418
inproceedings
sharma-EtAl:2012:BioNLP
Evaluating Joint Modeling of Yeast Biology Literature and Protein-Protein Interaction Networks
RamnathBalasubramanyan
KathrynRivard
William W.Cohen
JelenaJakovljevic
John L.Woolford
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
155–162
http://www.aclweb.org/anthology/W12-2419
inproceedings
balasubramanyan-EtAl:2012:BioNLP
RankPref: Ranking Sentences Describing Relations between Biomedical Entities with an Application
Catalina OanaTudor
KVijay-Shanker
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
163–171
http://www.aclweb.org/anthology/W12-2420
inproceedings
tudor-vijayshanker:2012:BioNLP
Finding small molecule and protein pairs in scientific literature using a bootstrapping method
YingYan
Jee-HyubKim
SamuelCroset
DietrichRebholz-Schuhmann
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
172–175
http://www.aclweb.org/anthology/W12-2421
inproceedings
yan-EtAl:2012:BioNLP
Grading the Quality of Medical Evidence
BinodGyawali
ThamarSolorio
YassineBenajiba
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
176–184
http://www.aclweb.org/anthology/W12-2422
inproceedings
gyawali-solorio-benajiba:2012:BioNLP
Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers
SunKim
WonKim
DonComeau
W. JohnWilbur
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
185–192
http://www.aclweb.org/anthology/W12-2423
inproceedings
kim-EtAl:2012:BioNLP
Effect of small sample size on text categorization with support vector machines
PawelMatykiewicz
JohnPestian
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
193–201
http://www.aclweb.org/anthology/W12-2424
inproceedings
matykiewicz-pestian:2012:BioNLP
PubAnnotation - a persistent and sharable corpus and annotation repository
Jin-DongKim
YueWang
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
202–205
http://www.aclweb.org/anthology/W12-2425
inproceedings
kim-wang:2012:BioNLP
Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts
RichardBoyce
GregoryGardner
HenkHarkema
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
206–213
http://www.aclweb.org/anthology/W12-2426
inproceedings
boyce-gardner-harkema:2012:BioNLP
Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation
NateSutton
LauraWojtulewicz
NeelMehta
GracielaGonzalez
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
214–222
http://www.aclweb.org/anthology/W12-2427
inproceedings
sutton-EtAl:2012:BioNLP
A Preliminary Work on Symptom Name Recognition from Free-Text Clinical Records of Traditional Chinese Medicine using Conditional Random Fields and Reasonable Features
YaqiangWang
YiguangLiu
ZhonghuaYu
LiChen
YongguangJiang
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
223–230
http://www.aclweb.org/anthology/W12-2428
inproceedings
wang-EtAl:2012:BioNLP
Scaling up WSD with Automatically Generated Examples
WeiweiCheng
JuditaPreiss
MarkStevenson
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
231–239
http://www.aclweb.org/anthology/W12-2429
inproceedings
cheng-preiss-stevenson:2012:BioNLP
Boosting the protein name recognition performance by bootstrapping on selected text
YueWang
Jin-DongKim
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
June
2012
Montrèal, Canada
Association for Computational Linguistics
240–243
http://www.aclweb.org/anthology/W12-2430
inproceedings
wang-kim:2012:BioNLP