@Book{BioNLPST:2013,
  editor    = {Claire Nédellec  and  Robert Bossy  and  Jin-Dong Kim  and  Jung-jae Kim  and  Tomoko Ohta  and  Sampo Pyysalo  and  Pierre Zweigenbaum},
  title     = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  url       = {http://www.aclweb.org/anthology/W13-20}
}

@InProceedings{nedellec-EtAl:2013:BioNLPST,
  author    = {N\'{e}dellec, Claire  and  Bossy, Robert  and  Kim, Jin-Dong  and  Kim, Jung-Jae  and  Ohta, Tomoko  and  Pyysalo, Sampo  and  Zweigenbaum, Pierre},
  title     = {Overview of BioNLP Shared Task 2013},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {1--7},
  url       = {http://www.aclweb.org/anthology/W13-2001}
}

@InProceedings{kim-wang-yasunori:2013:BioNLPST,
  author    = {Kim, Jin-Dong  and  Wang, Yue  and  Yasunori, Yamamoto},
  title     = {The Genia Event Extraction Shared Task, 2013 Edition - Overview},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {8--15},
  url       = {http://www.aclweb.org/anthology/W13-2002}
}

@InProceedings{bjorne-salakoski:2013:BioNLPST,
  author    = {Bj\"{o}rne, Jari  and  Salakoski, Tapio},
  title     = {TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {16--25},
  url       = {http://www.aclweb.org/anthology/W13-2003}
}

@InProceedings{hakala-EtAl:2013:BioNLPST,
  author    = {Hakala, Kai  and  Van Landeghem, Sofie  and  Salakoski, Tapio  and  Van de Peer, Yves  and  Ginter, Filip},
  title     = {EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {26--34},
  url       = {http://www.aclweb.org/anthology/W13-2004}
}

@InProceedings{mackinlay-EtAl:2013:BioNLPST,
  author    = {MacKinlay, Andrew  and  Martinez, David  and  Jimeno Yepes, Antonio  and  Liu, Haibin  and  Wilbur, W John  and  Verspoor, Karin},
  title     = {Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {35--44},
  url       = {http://www.aclweb.org/anthology/W13-2005}
}

@InProceedings{liu-bordes-grandvalet:2013:BioNLPST,
  author    = {Liu, Xiao  and  Bordes, Antoine  and  Grandvalet, Yves},
  title     = {Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {45--49},
  url       = {http://www.aclweb.org/anthology/W13-2006}
}

@InProceedings{kim-EtAl:2013:BioNLPST,
  author    = {Kim, Jung-Jae  and  Han, Xu  and  Lee, Vivian  and  Rebholz-Schuhmann, Dietrich},
  title     = {GRO Task: Populating the Gene Regulation Ontology with events and relations},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {50--57},
  url       = {http://www.aclweb.org/anthology/W13-2007}
}

@InProceedings{pyysalo-ohta-ananiadou:2013:BioNLPST,
  author    = {Pyysalo, Sampo  and  Ohta, Tomoko  and  Ananiadou, Sophia},
  title     = {Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {58--66},
  url       = {http://www.aclweb.org/anthology/W13-2008}
}

@InProceedings{ohta-EtAl:2013:BioNLPST,
  author    = {Ohta, Tomoko  and  Pyysalo, Sampo  and  Rak, Rafal  and  Rowley, Andrew  and  Chun, Hong-Woo  and  Jung, Sung-Jae  and  Choi, Sung-Pil  and  Ananiadou, Sophia  and  Tsujii, Jun'ichi},
  title     = {Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {67--75},
  url       = {http://www.aclweb.org/anthology/W13-2009}
}

@InProceedings{liu-EtAl:2013:BioNLPST,
  author    = {Liu, Haibin  and  Verspoor, Karin  and  Comeau, Donald C.  and  MacKinlay, Andrew  and  Wilbur, W John},
  title     = {Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {76--85},
  url       = {http://www.aclweb.org/anthology/W13-2010}
}

@InProceedings{ramanan-senthilnathan:2013:BioNLPST,
  author    = {Ramanan, SV  and  Senthil Nathan, P.},
  title     = {Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain.},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {86--93},
  url       = {http://www.aclweb.org/anthology/W13-2011}
}

@InProceedings{miwa-ananiadou:2013:BioNLPST,
  author    = {Miwa, Makoto  and  Ananiadou, Sophia},
  title     = {NaCTeM EventMine for BioNLP 2013 CG and PC tasks},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {94--98},
  url       = {http://www.aclweb.org/anthology/W13-2012}
}

@InProceedings{stenetorp-EtAl:2013:BioNLPST,
  author    = {Stenetorp, Pontus  and  Golik, Wiktoria  and  Hamon, Thierry  and  Comeau, Donald C.  and  Islamaj Dogan, Rezarta  and  Liu, Haibin  and  Wilbur, W John},
  title     = {BioNLP Shared Task 2013: Supporting Resources},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {99--103},
  url       = {http://www.aclweb.org/anthology/W13-2013}
}

@InProceedings{bui-EtAl:2013:BioNLPST,
  author    = {Bui, Quoc-Chinh  and  Campos, David  and  van Mulligen, Erik  and  Kors, Jan},
  title     = {A fast rule-based approach for biomedical event extraction},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {104--108},
  url       = {http://www.aclweb.org/anthology/W13-2014}
}

@InProceedings{li-wang-huang:2013:BioNLPST,
  author    = {Li, Lishuang  and  Wang, Yiwen  and  Huang, Degen},
  title     = {Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {109--115},
  url       = {http://www.aclweb.org/anthology/W13-2015}
}

@InProceedings{schneider-EtAl:2013:BioNLPST,
  author    = {Schneider, Gerold  and  Clematide, Simon  and  Ellendorff, Tilia  and  Tuggener, Don  and  Rinaldi, Fabio  and  Grigonytė, Gintarė},
  title     = {UZH in BioNLP 2013},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {116--120},
  url       = {http://www.aclweb.org/anthology/W13-2016}
}

@InProceedings{pham-le-ho:2013:BioNLPST,
  author    = {Pham, Xuan Quang  and  Le, Minh Quang  and  Ho, Bao Quoc},
  title     = {A Hybrid approach for biomedical event extraction},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {121--124},
  url       = {http://www.aclweb.org/anthology/W13-2017}
}

@InProceedings{roller-stevenson:2013:BioNLPST,
  author    = {Roller, Roland  and  Stevenson, Mark},
  title     = {Identification of Genia Events using Multiple Classifiers},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {125--129},
  url       = {http://www.aclweb.org/anthology/W13-2018}
}

@InProceedings{tran-EtAl:2013:BioNLPST,
  author    = {Tran, Mai-Vu  and  Collier, Nigel  and  Le, Hoang-Quynh  and  Phi, Van-Thuy  and  Pham, Thanh-Binh},
  title     = {Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {130--134},
  url       = {http://www.aclweb.org/anthology/W13-2019}
}

@InProceedings{provoost-moens:2013:BioNLPST,
  author    = {Provoost, Thomas  and  Moens, Marie-Francine},
  title     = {Detecting Relations in the Gene Regulation Network},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {135--138},
  url       = {http://www.aclweb.org/anthology/W13-2020}
}

@InProceedings{bannour-audibert-soldano:2013:BioNLPST,
  author    = {Bannour, Sondes  and  Audibert, Laurent  and  Soldano, Henry},
  title     = {Ontology-based semantic annotation: an automatic hybrid rule-based method},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {139--143},
  url       = {http://www.aclweb.org/anthology/W13-2021}
}

@InProceedings{grouin:2013:BioNLPST,
  author    = {Grouin, Cyril},
  title     = {Building A Contrasting Taxa Extractor for Relation Identification from Assertions: BIOlogical Taxonomy \& Ontology Phrase Extraction System},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {144--152},
  url       = {http://www.aclweb.org/anthology/W13-2022}
}

@InProceedings{bossy-bessieres-nedellec:2013:BioNLPST,
  author    = {Bossy, Robert  and  Bessi\`{e}res, Philippe  and  N\'{e}dellec, Claire},
  title     = {BioNLP Shared Task 2013 -- An overview of the Genic Regulation Network Task},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {153--160},
  url       = {http://www.aclweb.org/anthology/W13-2023}
}

@InProceedings{bossy-EtAl:2013:BioNLPST,
  author    = {Bossy, Robert  and  Golik, Wiktoria  and  Ratkovic, Zorana  and  Bessi\`{e}res, Philippe  and  N\'{e}dellec, Claire},
  title     = {BioNLP shared Task 2013 -- An Overview of the Bacteria Biotope Task},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {161--169},
  url       = {http://www.aclweb.org/anthology/W13-2024}
}

@InProceedings{karadeniz-ozgur:2013:BioNLPST,
  author    = {Karadeniz, İlknur  and  \"{O}zg\"{u}r, Arzucan},
  title     = {Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {170--177},
  url       = {http://www.aclweb.org/anthology/W13-2025}
}

@InProceedings{zitnik-EtAl:2013:BioNLPST,
  author    = {Zitnik, Slavko  and  \v{Z}itnik, Marinka  and  Zupan, Bla\v{z}  and  Bajec, Marko},
  title     = {Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {178--187},
  url       = {http://www.aclweb.org/anthology/W13-2026}
}

@InProceedings{claveau:2013:BioNLPST,
  author    = {Claveau, Vincent},
  title     = {IRISA participation to BioNLP-ST13: lazy-learning and information retrieval for information extraction tasks},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {188--196},
  url       = {http://www.aclweb.org/anthology/W13-2027}
}