<?xml version="1.0" encoding="UTF-8" ?>
<volume id="W15">
  <paper id="3800">
    <title>Proceedings of BioNLP 15</title>
    <editor>Kevin Bretonnel Cohen</editor>
    <editor>Dina Demner-Fushman</editor>
    <editor>Sophia Ananiadou</editor>
    <editor>Jun-ichi Tsujii</editor>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <url>http://www.aclweb.org/anthology/W15-38</url>
    <bibtype>book</bibtype>
    <bibkey>BioNLP15:2015</bibkey>
  </paper>

  <paper id="3801">
    <title>Complex Event Extraction using DRUM</title>
    <author><first>James</first><last>Allen</last></author>
    <author><first>Will</first><last>de Beaumont</last></author>
    <author><first>Lucian</first><last>Galescu</last></author>
    <author><first>Choh Man</first><last>Teng</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>1&#8211;11</pages>
    <url>http://www.aclweb.org/anthology/W15-3801</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>allen-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3802">
    <title>Making the most of limited training data using distant supervision</title>
    <author><first>Roland</first><last>Roller</last></author>
    <author><first>Mark</first><last>Stevenson</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>12&#8211;20</pages>
    <url>http://www.aclweb.org/anthology/W15-3802</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>roller-stevenson:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3803">
    <title>An extended dependency graph for relation extraction in biomedical texts</title>
    <author><first>Yifan</first><last>Peng</last></author>
    <author><first>Samir</first><last>Gupta</last></author>
    <author><first>Cathy</first><last>Wu</last></author>
    <author><first>Vijay</first><last>Shanker</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>21&#8211;30</pages>
    <url>http://www.aclweb.org/anthology/W15-3803</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>peng-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3804">
    <title>Event Extraction in pieces:Tackling the partial event identification problem on unseen corpora</title>
    <author><first>Chrysoula</first><last>Zerva</last></author>
    <author><first>Sophia</first><last>Ananiadou</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>31&#8211;41</pages>
    <url>http://www.aclweb.org/anthology/W15-3804</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>zerva-ananiadou:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3805">
    <title>Extracting Biological Pathway Models From NLP Event Representations</title>
    <author><first>Michael</first><last>Spranger</last></author>
    <author><first>Sucheendra</first><last>Palaniappan</last></author>
    <author><first>Samik</first><last>Ghosh</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>42&#8211;51</pages>
    <url>http://www.aclweb.org/anthology/W15-3805</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>spranger-palaniappan-ghosh:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3806">
    <title>Shallow Training is cheap but is it good enough? Experiments with Medical Fact Coding</title>
    <author><first>Ramesh</first><last>Nallapati</last></author>
    <author><first>Radu</first><last>Florian</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>52&#8211;60</pages>
    <url>http://www.aclweb.org/anthology/W15-3806</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>nallapati-florian:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3807">
    <title>Stacked Generalization for Medical Concept Extraction from Clinical Notes</title>
    <author><first>Youngjun</first><last>Kim</last></author>
    <author><first>Ellen</first><last>Riloff</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>61&#8211;70</pages>
    <url>http://www.aclweb.org/anthology/W15-3807</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>kim-riloff:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3808">
    <title>Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs</title>
    <author><first>Mohsen</first><last>Hassan</last></author>
    <author><first>Olfa</first><last>Makkaoui</last></author>
    <author><first>Adrien</first><last>Coulet</last></author>
    <author><first>Yannick</first><last>Toussain</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>71&#8211;80</pages>
    <url>http://www.aclweb.org/anthology/W15-3808</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>hassan-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3809">
    <title>Extracting Time Expressions from Clinical Text</title>
    <author><first>Timothy</first><last>Miller</last></author>
    <author><first>Steven</first><last>Bethard</last></author>
    <author><first>Dmitriy</first><last>Dligach</last></author>
    <author><first>Chen</first><last>Lin</last></author>
    <author><first>Guergana</first><last>Savova</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>81&#8211;91</pages>
    <url>http://www.aclweb.org/anthology/W15-3809</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>miller-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3810">
    <title>Exploiting Task-Oriented Resources to Learn Word Embeddings for Clinical Abbreviation Expansion</title>
    <author><first>Yue</first><last>Liu</last></author>
    <author><first>Tao</first><last>Ge</last></author>
    <author><first>Kusum</first><last>Mathews</last></author>
    <author><first>Heng</first><last>Ji</last></author>
    <author><first>Deborah</first><last>McGuinness</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>92&#8211;97</pages>
    <url>http://www.aclweb.org/anthology/W15-3810</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>liu-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3811">
    <title>Semantic Type Classification of Common Words in Biomedical Noun Phrases</title>
    <author><first>Amy</first><last>Siu</last></author>
    <author><first>Gerhard</first><last>Weikum</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>98&#8211;103</pages>
    <url>http://www.aclweb.org/anthology/W15-3811</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>siu-weikum:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3812">
    <title>CoMAGD: Annotation of Gene-Depression Relations</title>
    <author><first>Rize</first><last>Jin</last></author>
    <author><first>Jinseon</first><last>You</last></author>
    <author><first>Jin-Woo</first><last>Chung</last></author>
    <author><first>Hee-Jin</first><last>Lee</last></author>
    <author><first>Maria</first><last>Wolters</last></author>
    <author><first>Jong</first><last>Park</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>104&#8211;113</pages>
    <url>http://www.aclweb.org/anthology/W15-3812</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>jin-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3813">
    <title>Lexical Characteristics Analysis of Chinese Clinical Documents</title>
    <author><first>Meizhi</first><last>Ju</last></author>
    <author><first>Haomin</first><last>Li</last></author>
    <author><first>Huilong</first><last>Duan</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>114&#8211;120</pages>
    <url>http://www.aclweb.org/anthology/W15-3813</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>ju-li-duan:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3814">
    <title>Using word embedding for bio-event extraction</title>
    <author><first>Chen</first><last>Li</last></author>
    <author><first>Runqing</first><last>Song</last></author>
    <author><first>Maria</first><last>Liakata</last></author>
    <author><first>Andreas</first><last>Vlachos</last></author>
    <author><first>Stephanie</first><last>Seneff</last></author>
    <author><first>Xiangrong</first><last>Zhang</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>121&#8211;126</pages>
    <url>http://www.aclweb.org/anthology/W15-3814</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>li-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3815">
    <title>Measuring the readability of medical research journal abstracts</title>
    <author><first>Samuel J.</first><last>Severance</last></author>
    <author><first>K. Bretonnel</first><last>Cohen</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>127&#8211;133</pages>
    <url>http://www.aclweb.org/anthology/W15-3815</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>severance-cohen:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3816">
    <title>Translating Electronic Health Record Notes from English to Spanish: A Preliminary Study</title>
    <author><first>Weisong</first><last>Liu</last></author>
    <author><first>Shu</first><last>Cai</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>134&#8211;140</pages>
    <url>http://www.aclweb.org/anthology/W15-3816</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>liu-cai:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3817">
    <title>Automatic Detection of Answers to Research Questions from Medline Abstracts</title>
    <author><first>Abdulaziz</first><last>Alamri</last></author>
    <author><first>Mark</first><last>Stevenson</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>141&#8211;146</pages>
    <url>http://www.aclweb.org/anthology/W15-3817</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>alamri-stevenson:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3818">
    <title>A preliminary study on automatic identification of patient smoking status in unstructured electronic health records</title>
    <author><first>Jitendra</first><last>Jonnagaddala</last></author>
    <author><first>Hong-Jie</first><last>Dai</last></author>
    <author><first>Pradeep</first><last>Ray</last></author>
    <author><first>Siaw-Teng</first><last>Liaw</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>147&#8211;151</pages>
    <url>http://www.aclweb.org/anthology/W15-3818</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>jonnagaddala-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3819">
    <title>Restoring the intended structure of Hungarian ophthalmology documents</title>
    <author><first>Borb&#225;la</first><last>Sikl&#243;si</last></author>
    <author><first>Attila</first><last>Nov&#225;k</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>152&#8211;157</pages>
    <url>http://www.aclweb.org/anthology/W15-3819</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>siklosi-novak:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3820">
    <title>Evaluating distributed word representations for capturing semantics of biomedical concepts</title>
    <author><first>MUNEEB</first><last>TH</last></author>
    <author><first>Sunil</first><last>Sahu</last></author>
    <author><first>Ashish</first><last>Anand</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>158&#8211;163</pages>
    <url>http://www.aclweb.org/anthology/W15-3820</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>th-sahu-anand:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3821">
    <title>Investigating Public Health Surveillance using Twitter</title>
    <author><first>Antonio</first><last>Jimeno Yepes</last></author>
    <author><first>Andrew</first><last>MacKinlay</last></author>
    <author><first>Bo</first><last>Han</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>164&#8211;170</pages>
    <url>http://www.aclweb.org/anthology/W15-3821</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>jimenoyepes-mackinlay-han:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3822">
    <title>Clinical Abbreviation Disambiguation Using Neural Word Embeddings</title>
    <author><first>yonghui</first><last>wu</last></author>
    <author><first>Jun</first><last>Xu</last></author>
    <author><first>Yaoyun</first><last>Zhang</last></author>
    <author><first>Hua</first><last>Xu</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>171&#8211;176</pages>
    <url>http://www.aclweb.org/anthology/W15-3822</url>
    <bibtype>inproceedings</bibtype>
    <bibkey>wu-EtAl:2015:BioNLP15</bibkey>
  </paper>

  <paper id="3823">
    <title>Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing</title>
    <author><first>Na</first><last>Hong</last></author>
    <author><first>Dingcheng</first><last>Li</last></author>
    <author><first>Yue</first><last>Yu</last></author>
    <author><first>Hongfang</first><last>Liu</last></author>
    <author><first>Christopher</first><last>G. Chute</last></author>
    <author><first>Guoqian</first><last>Jiang</last></author>
    <booktitle>Proceedings of BioNLP 15</booktitle>
    <month>July</month>
    <year>2015</year>
    <address>Beijing, China</address>
    <publisher>Association for Computational Linguistics</publisher>
    <pages>177&#8211;182</pages>
    <url>http://www.aclweb.org/anthology/W15-3823</url>
    <attachment type="note">W15-3823.Notes.pdf</attachment>
    <bibtype>inproceedings</bibtype>
    <bibkey>hong-EtAl:2015:BioNLP15</bibkey>
  </paper>

</volume>

