Biomedical Natural Language Processing Workshop (2009)
2 volumes · 45 papers (0% with DOI) · 153 unique authors (25% verified with ORCID)
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Proceedings of the BioNLP 2009 Workshop
Proceedings of the BioNLP 2009 Workshop
K. Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii | Bonnie Webber
K. Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii | Bonnie Webber
Static Relations: a Piece in the Biomedical Information Extraction Puzzle
Sampo Pyysalo | Tomoko Ohta | Jin-Dong Kim | Jun’ichi Tsujii
Sampo Pyysalo | Tomoko Ohta | Jin-Dong Kim | Jun’ichi Tsujii
Distinguishing Historical from Current Problems in Clinical Reports – Which Textual Features Help?
Danielle Mowery | Henk Harkema | John Dowling | Jonathan Lustgarten | Wendy Chapman
Danielle Mowery | Henk Harkema | John Dowling | Jonathan Lustgarten | Wendy Chapman
ONYX: A System for the Semantic Analysis of Clinical Text
Lee Christensen | Henk Harkema | Peter Haug | Jeannie Irwin | Wendy Chapman
Lee Christensen | Henk Harkema | Peter Haug | Jeannie Irwin | Wendy Chapman
How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions
Udo Hahn | Katrin Tomanek | Ekaterina Buyko | Jung-jae Kim | Dietrich Rebholz-Schuhmann
Udo Hahn | Katrin Tomanek | Ekaterina Buyko | Jung-jae Kim | Dietrich Rebholz-Schuhmann
Extraction of Named Entities from Tables in Gene Mutation Literature
Wern Wong | David Martinez | Lawrence Cavedon
Wern Wong | David Martinez | Lawrence Cavedon
Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon
Rong Xu | Alexander A. Morgan | Amar Das | Alan Garber
Rong Xu | Alexander A. Morgan | Amar Das | Alan Garber
Disambiguation of Biomedical Abbreviations
Mark Stevenson | Yikun Guo | Abdulaziz Alamri | Robert Gaizauskas
Mark Stevenson | Yikun Guo | Abdulaziz Alamri | Robert Gaizauskas
TX Task: Automatic Detection of Focus Organisms in Biomedical Publications
Thomas Kappeler | Kaarel Kaljurand | Fabio Rinaldi
Thomas Kappeler | Kaarel Kaljurand | Fabio Rinaldi
Exploring Graph Structure for Detection of Reliability Zones within Synonym Resources: Experiment with the Gene Ontology
Thierry Hamon | Natalia Grabar
Thierry Hamon | Natalia Grabar
Incorporating GENETAG-style annotation to GENIA corpus
Tomoko Ohta | Jin-Dong Kim | Sampo Pyysalo | Yue Wang | Jun’ichi Tsujii
Tomoko Ohta | Jin-Dong Kim | Sampo Pyysalo | Yue Wang | Jun’ichi Tsujii
User-Driven Development of Text Mining Resources for Cancer Risk Assessment
Lin Sun | Anna Korhonen | Ilona Silins | Ulla Stenius
Lin Sun | Anna Korhonen | Ilona Silins | Ulla Stenius
Transforming Controlled Natural Language Biomedical Queries into Answer Set Programs
Esra Erdem | Reyyan Yeniterzi
Esra Erdem | Reyyan Yeniterzi
Incorporating Syntactic Dependency Information towards Improved Coding of Lengthy Medical Concepts in Clinical Reports
Vijayaraghavan Bashyam | Ricky K Taira
Vijayaraghavan Bashyam | Ricky K Taira
Identifying Interaction Sentences from Biological Literature Using Automatically Extracted Patterns
Haibin Liu | Christian Blouin | Vlado Kešelj
Haibin Liu | Christian Blouin | Vlado Kešelj
Using Hedges to Enhance a Disease Outbreak Report Text Mining System
Mike Conway | Son Doan | Nigel Collier
Mike Conway | Son Doan | Nigel Collier
Exploring Two Biomedical Text Genres for Disease Recognition
Aurélie Névéol | Won Kim | W. John Wilbur | Zhiyong Lu
Aurélie Névéol | Won Kim | W. John Wilbur | Zhiyong Lu
Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics
Sumire Uematsu | Jin-Dong Kim | Jun’ichi Tsujii
Sumire Uematsu | Jin-Dong Kim | Jun’ichi Tsujii
Evaluation of the Clinical Question Answering Presentation
Yong-Gang Cao | John Ely | Lamont Antieau | Hong Yu
Yong-Gang Cao | John Ely | Lamont Antieau | Hong Yu
Clustering Semantic Spaces of Suicide Notes and Newsgroups Articles.
Pawel Matykiewicz | Wlodzislaw Duch | John Pestian
Pawel Matykiewicz | Wlodzislaw Duch | John Pestian
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Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task
Overview of BioNLP’09 Shared Task on Event Extraction
Jin-Dong Kim | Tomoko Ohta | Sampo Pyysalo | Yoshinobu Kano | Jun’ichi Tsujii
Jin-Dong Kim | Tomoko Ohta | Sampo Pyysalo | Yoshinobu Kano | Jun’ichi Tsujii
Extracting Complex Biological Events with Rich Graph-Based Feature Sets
Jari Björne | Juho Heimonen | Filip Ginter | Antti Airola | Tapio Pahikkala | Tapio Salakoski
Jari Björne | Juho Heimonen | Filip Ginter | Antti Airola | Tapio Pahikkala | Tapio Salakoski
Event Extraction from Trimmed Dependency Graphs
Ekaterina Buyko | Erik Faessler | Joachim Wermter | Udo Hahn
Ekaterina Buyko | Erik Faessler | Joachim Wermter | Udo Hahn
Biomedical Event Extraction without Training Data
Andreas Vlachos | Paula Buttery | Diarmuid Ó Séaghdha | Ted Briscoe
Andreas Vlachos | Paula Buttery | Diarmuid Ó Séaghdha | Ted Briscoe
A Markov Logic Approach to Bio-Molecular Event Extraction
Sebastian Riedel | Hong-Woo Chun | Toshihisa Takagi | Jun’ichi Tsujii
Sebastian Riedel | Hong-Woo Chun | Toshihisa Takagi | Jun’ichi Tsujii
High-precision biological event extraction with a concept recognizer
K. Bretonnel Cohen | Karin Verspoor | Helen Johnson | Chris Roeder | Philip Ogren | William Baumgartner | Elizabeth White | Lawrence Hunter
K. Bretonnel Cohen | Karin Verspoor | Helen Johnson | Chris Roeder | Philip Ogren | William Baumgartner | Elizabeth White | Lawrence Hunter
A memory-based learning approach to event extraction in biomedical texts
Roser Morante | Vincent Van Asch | Walter Daelemans
Roser Morante | Vincent Van Asch | Walter Daelemans
Extraction of biomedical events using case-based reasoning
Mariana Neves | José-María Carazo | Alberto Pascual-Montano
Mariana Neves | José-María Carazo | Alberto Pascual-Montano
Biomedical Event Annotation with CRFs and Precision Grammars
Andrew MacKinlay | David Martinez | Timothy Baldwin
Andrew MacKinlay | David Martinez | Timothy Baldwin
Molecular event extraction from Link Grammar parse trees
Jörg Hakenberg | Illés Solt | Domonkos Tikk | Luis Tari | Astrid Rheinländer | Nguyen Quang Long | Graciela Gonzalez | Ulf Leser
Jörg Hakenberg | Illés Solt | Domonkos Tikk | Luis Tari | Astrid Rheinländer | Nguyen Quang Long | Graciela Gonzalez | Ulf Leser
Tunable Domain-Independent Event Extraction in the MIRA Framework
Georgi Georgiev | Kuzman Ganchev | Vassil Momchev | Deyan Peychev | Preslav Nakov | Angus Roberts
Georgi Georgiev | Kuzman Ganchev | Vassil Momchev | Deyan Peychev | Preslav Nakov | Angus Roberts
BioEve: Bio-Molecular Event Extraction from Text Using Semantic Classification and Dependency Parsing
Syed Toufeeq Ahmed | Radhika Nair | Chintan Patel | Hasan Davulcu
Syed Toufeeq Ahmed | Radhika Nair | Chintan Patel | Hasan Davulcu
From Protein-Protein Interaction to Molecular Event Extraction
Rune Sætre | Makoto Miwa | Kazuhiro Yoshida | Jun’ichi Tsujii
Rune Sætre | Makoto Miwa | Kazuhiro Yoshida | Jun’ichi Tsujii
A Multi-Phase Approach to Biomedical Event Extraction
Hyoung-Gyu Lee | Han-Cheol Cho | Min-Jeong Kim | Joo-Young Lee | Gumwon Hong | Hae-Chang Rim
Hyoung-Gyu Lee | Han-Cheol Cho | Min-Jeong Kim | Joo-Young Lee | Gumwon Hong | Hae-Chang Rim
Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances
Farzaneh Sarafraz | James Eales | Reza Mohammadi | Jonathan Dickerson | David Robertson | Goran Nenadic
Farzaneh Sarafraz | James Eales | Reza Mohammadi | Jonathan Dickerson | David Robertson | Goran Nenadic
Syntactic Dependency Based Heuristics for Biological Event Extraction
Halil Kilicoglu | Sabine Bergler
Halil Kilicoglu | Sabine Bergler