Biomedical Natural Language Processing Workshop (2013)
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing
Kevin Bretonnel Cohen
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Dina Demner-Fushman
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Sophia Ananiadou
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John Pestian
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Jun’ichi Tsujii
Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing
Pawel Matykiewicz
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Kevin Cohen
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Katherine D. Holland
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Tracy A. Glauser
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Shannon M. Standridge
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Karin M. Verspoor
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John Pestian
Identification of Patients with Acute Lung Injury from Free-Text Chest X-Ray Reports
Meliha Yetisgen-Yildiz
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Cosmin Bejan
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Mark Wurfel
Discovering Temporal Narrative Containers in Clinical Text
Timothy Miller
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Steven Bethard
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Dmitriy Dligach
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Sameer Pradhan
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Chen Lin
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Guergana Savova
Identifying Pathological Findings in German Radiology Reports Using a Syntacto-semantic Parsing Approach
Claudia Bretschneider
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Sonja Zillner
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Matthias Hammon
Corpus-Driven Terminology Development: Populating Swedish SNOMED CT with Synonyms Extracted from Electronic Health Records
Aron Henriksson
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Maria Skeppstedt
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Maria Kvist
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Martin Duneld
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Mike Conway
Unsupervised Linguistically-Driven Reliable Dependency Parses Detection and Self-Training for Adaptation to the Biomedical Domain
Felice Dell’Orletta
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Giulia Venturi
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Simonetta Montemagni
Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis
Halil Kilicoglu
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Marcelo Fiszman
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Dina Demner-Fushman
Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures
Sofie Van Landeghem
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Suwisa Kaewphan
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Filip Ginter
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Yves Van de Peer
Recognizing Sublanguages in Scientific Journal Articles through Closure Properties
Irina Temnikova
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Kevin Cohen
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations
Juliane Fluck
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Alexander Klenner
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Sumit Madan
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Sam Ansari
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Tamara Bobic
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Julia Hoeng
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Martin Hofmann--Apitius
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Manuel Peitsch
Exploring Word Class N-grams to Measure Language Development in Children
Gabriela Ramírez de la Rosa
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Thamar Solorio
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Manuel Montes
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Yang Liu
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Lisa Bedore
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Elizabeth Peña
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Aquiles Iglesias
Adapting a Parser to Clinical Text by Simple Pre-processing Rules
Maria Skeppstedt
Using the Argumentative Structure of Scientific Literature to Improve Information Access
Antonio Jimeno Yepes
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James Mork
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Alan Aronson
Using Latent Dirichlet Allocation for Child Narrative Analysis
Khairun-nisa Hassanali
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Yang Liu
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Thamar Solorio
Effect of Out Of Vocabulary Terms on Inferring Eligibility Criteria for a Retrospective Study in Hebrew EHR
Raphael Cohen
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Michael Elhadad
Parallels between Linguistics and Biology
Sutanu Chakraborti
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Ashish Tendulkar
Proceedings of the BioNLP Shared Task 2013 Workshop
Proceedings of the BioNLP Shared Task 2013 Workshop
Claire Nédellec
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Robert Bossy
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Jin-Dong Kim
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Jung-jae Kim
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Tomoko Ohta
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Sampo Pyysalo
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Pierre Zweigenbaum
Overview of BioNLP Shared Task 2013
Claire Nédellec
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Robert Bossy
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Jin-Dong Kim
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Jung-jae Kim
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Tomoko Ohta
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Sampo Pyysalo
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Pierre Zweigenbaum
The Genia Event Extraction Shared Task, 2013 Edition - Overview
Jin-Dong Kim
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Yue Wang
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Yamamoto Yasunori
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task
Jari Björne
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Tapio Salakoski
EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction
Kai Hakala
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Sofie Van Landeghem
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Tapio Salakoski
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Yves Van de Peer
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Filip Ginter
Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data
Andrew MacKinlay
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David Martinez
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Antonio Jimeno Yepes
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Haibin Liu
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W. John Wilbur
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Karin Verspoor
Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities
Xiao Liu
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Antoine Bordes
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Yves Grandvalet
GRO Task: Populating the Gene Regulation Ontology with events and relations
Jung-jae Kim
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Xu Han
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Vivian Lee
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Dietrich Rebholz-Schuhmann
Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
Sampo Pyysalo
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Tomoko Ohta
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Sophia Ananiadou
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
Tomoko Ohta
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Sampo Pyysalo
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Rafal Rak
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Andrew Rowley
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Hong-Woo Chun
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Sung-Jae Jung
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Sung-Pil Choi
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Sophia Ananiadou
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Jun’ichi Tsujii
Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics
Haibin Liu
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Karin Verspoor
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Donald C. Comeau
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Andrew MacKinlay
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W. John Wilbur
Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain.
SV Ramanan
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P. Senthil Nathan
NaCTeM EventMine for BioNLP 2013 CG and PC tasks
Makoto Miwa
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Sophia Ananiadou
BioNLP Shared Task 2013: Supporting Resources
Pontus Stenetorp
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Wiktoria Golik
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Thierry Hamon
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Donald C. Comeau
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Rezarta Islamaj Doğan
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Haibin Liu
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W. John Wilbur
A fast rule-based approach for biomedical event extraction
Quoc-Chinh Bui
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David Campos
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Erik van Mulligen
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Jan Kors
Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information
Lishuang Li
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Yiwen Wang
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Degen Huang
UZH in BioNLP 2013
Gerold Schneider
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Simon Clematide
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Tilia Ellendorff
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Don Tuggener
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Fabio Rinaldi
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Gintarė Grigonytė
A Hybrid approach for biomedical event extraction
Xuan Quang Pham
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Minh Quang Le
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Bao Quoc Ho
Identification of Genia Events using Multiple Classifiers
Roland Roller
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Mark Stevenson
Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts
Mai-Vu Tran
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Nigel Collier
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Hoang-Quynh Le
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Van-Thuy Phi
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Thanh-Binh Pham
Detecting Relations in the Gene Regulation Network
Thomas Provoost
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Marie-Francine Moens
Ontology-based semantic annotation: an automatic hybrid rule-based method
Sondes Bannour
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Laurent Audibert
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Henry Soldano
Building A Contrasting Taxa Extractor for Relation Identification from Assertions: BIOlogical Taxonomy & Ontology Phrase Extraction System
Cyril Grouin
BioNLP Shared Task 2013 – An overview of the Genic Regulation Network Task
Robert Bossy
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Philippe Bessières
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Claire Nédellec
BioNLP shared Task 2013 – An Overview of the Bacteria Biotope Task
Robert Bossy
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Wiktoria Golik
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Zorana Ratkovic
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Philippe Bessières
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Claire Nédellec
Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules
İlknur Karadeniz
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Arzucan Özgür
Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules
Slavko Žitnik
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Marinka Žitnik
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Blaž Zupan
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Marko Bajec
IRISA participation to BioNLP-ST13: lazy-learning and information retrieval for information extraction tasks
Vincent Claveau