Biomedical Natural Language Processing Workshop (2016)
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin Bretonnel Cohen
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Dina Demner-Fushman
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Sophia Ananiadou
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Jun-ichi Tsujii
A Machine Learning Approach to Clinical Terms Normalization
José Castaño
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María Laura Gambarte
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Hee Joon Park
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Maria del Pilar Avila Williams
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David Pérez
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Fernando Campos
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Daniel Luna
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Sonia Benítez
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Hernán Berinsky
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Sofía Zanetti
Improved Semantic Representation for Domain-Specific Entities
Mohammad Taher Pilehvar
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Nigel Collier
Identification, characterization, and grounding of gradable terms in clinical text
Chaitanya Shivade
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Marie-Catherine de Marneffe
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Eric Fosler-Lussier
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Albert M. Lai
Graph-based Semi-supervised Gene Mention Tagging
Golnar Sheikhshab
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Elizabeth Starks
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Aly Karsan
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Anoop Sarkar
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Inanc Birol
Feature Derivation for Exploitation of Distant Annotation via Pattern Induction against Dependency Parses
Dayne Freitag
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John Niekrasz
Inferring Implicit Causal Relationships in Biomedical Literature
Halil Kilicoglu
SnapToGrid: From Statistical to Interpretable Models for Biomedical Information Extraction
Marco A. Valenzuela-Escárcega
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Gus Hahn-Powell
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Dane Bell
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Mihai Surdeanu
Character based String Kernels for Bio-Entity Relation Detection
Ritambhara Singh
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Yanjun Qi
Disambiguation of entities in MEDLINE abstracts by combining MeSH terms with knowledge
Amy Siu
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Patrick Ernst
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Gerhard Weikum
Using Distributed Representations to Disambiguate Biomedical and Clinical Concepts
Stéphan Tulkens
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Simon Suster
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Walter Daelemans
Unsupervised Document Classification with Informed Topic Models
Timothy Miller
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Dmitriy Dligach
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Guergana Savova
Vocabulary Development To Support Information Extraction of Substance Abuse from Psychiatry Notes
Sumithra Velupillai
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Danielle L. Mowery
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Mike Conway
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John Hurdle
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Brent Kious
Syntactic analyses and named entity recognition for PubMed and PubMed Central — up-to-the-minute
Kai Hakala
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Suwisa Kaewphan
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Tapio Salakoski
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Filip Ginter
Improving Temporal Relation Extraction with Training Instance Augmentation
Chen Lin
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Timothy Miller
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Dmitriy Dligach
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Steven Bethard
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Guergana Savova
Using Centroids of Word Embeddings and Word Mover’s Distance for Biomedical Document Retrieval in Question Answering
Georgios-Ioannis Brokos
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Prodromos Malakasiotis
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Ion Androutsopoulos
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway
Michael Spranger
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Sucheendra Palaniappan
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Samik Gosh
Construction of a Personal Experience Tweet Corpus for Health Surveillance
Keyuan Jiang
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Ricardo Calix
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Matrika Gupta
Modelling the Combination of Generic and Target Domain Embeddings in a Convolutional Neural Network for Sentence Classification
Nut Limsopatham
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Nigel Collier
PubTermVariants: biomedical term variants and their use for PubMed search
Lana Yeganova
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Won Kim
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Sun Kim
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Rezarta Islamaj Doğan
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Wanli Liu
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Donald C Comeau
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Zhiyong Lu
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W John Wilbur
This before That: Causal Precedence in the Biomedical Domain
Gus Hahn-Powell
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Dane Bell
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Marco A. Valenzuela-Escárcega
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Mihai Surdeanu
Syntactic methods for negation detection in radiology reports in Spanish
Viviana Cotik
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Vanesa Stricker
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Jorge Vivaldi
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Horacio Rodriguez
How to Train good Word Embeddings for Biomedical NLP
Billy Chiu
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Gamal Crichton
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Anna Korhonen
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Sampo Pyysalo
An Information Foraging Approach to Determining the Number of Relevant Features
Brian Connolly
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Benjamin Glass
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John Pestian
Assessing the Feasibility of an Automated Suggestion System for Communicating Critical Findings from Chest Radiology Reports to Referring Physicians
Brian E. Chapman
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Danielle L. Mowery
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Evan Narasimhan
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Neel Patel
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Wendy Chapman
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Marta Heilbrun
Building a dictionary of lexical variants for phenotype descriptors
Simon Kocbek
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Tudor Groza
Applying deep learning on electronic health records in Swedish to predict healthcare-associated infections
Olof Jacobson
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Hercules Dalianis
Identifying First Episodes of Psychosis in Psychiatric Patient Records using Machine Learning
Genevieve Gorrell
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Sherifat Oduola
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Angus Roberts
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Tom Craig
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Craig Morgan
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Rob Stewart
Relation extraction from clinical texts using domain invariant convolutional neural network
Sunil Sahu
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Ashish Anand
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Krishnadev Oruganty
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Mahanandeeshwar Gattu
Proceedings of the 4th BioNLP Shared Task Workshop
Proceedings of the 4th BioNLP Shared Task Workshop
Claire Nėdellec
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Robert Bossy
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Jin-Dong Kim
Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016.
Estelle Chaix
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Bertrand Dubreucq
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Abdelhak Fatihi
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Dialekti Valsamou
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Robert Bossy
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Mouhamadou Ba
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Louise Deléger
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Pierre Zweigenbaum
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Philippe Bessières
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Loic Lepiniec
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Claire Nédellec
Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016
Louise Deléger
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Robert Bossy
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Estelle Chaix
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Mouhamadou Ba
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Arnaud Ferré
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Philippe Bessières
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Claire Nédellec
Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development
Jin-Dong Kim
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Yue Wang
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Nicola Colic
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Seung Han Beak
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Yong Hwan Kim
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Min Song
LitWay, Discriminative Extraction for Different Bio-Events
Chen Li
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Zhiqiang Rao
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Xiangrong Zhang
VERSE: Event and Relation Extraction in the BioNLP 2016 Shared Task
Jake Lever
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Steven JM Jones
A dictionary- and rule-based system for identification of bacteria and habitats in text
Helen V Cook
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Evangelos Pafilis
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Lars Juhl Jensen
Ontology-Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques
Mert Tiftikci
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Hakan Şahin
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Berfu Büyüköz
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Alper Yayıkçı
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Arzucan Özgür
Identification of Mentions and Relations between Bacteria and Biotope from PubMed Abstracts
Cyril Grouin
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016
Farrokh Mehryary
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Jari Björne
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Sampo Pyysalo
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Tapio Salakoski
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Filip Ginter
SeeDev Binary Event Extraction using SVMs and a Rich Feature Set
Nagesh C. Panyam
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Gitansh Khirbat
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Karin Verspoor
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Trevor Cohn
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Kotagiri Ramamohanarao
Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision
Andre Lamurias
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Miguel J. Rodrigues
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Luka A. Clarke
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Francisco M. Couto
DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations
Honglei Li
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Jianhai Zhang
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Jian Wang
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Hongfei Lin
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Zhihao Yang
Extracting Biomedical Event Using Feature Selection and Word Representation
Xinyu He
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Lishuang Li
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Jieqiong Zheng
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Meiyue Qin