As post-training techniques evolve, large language models (LLMs) are increasingly augmented with structured multi-step reasoning abilities, often optimized through reinforcement learning. These reasoning-enhanced models outperform standard LLMs on complex tasks and now underpin many commercial LLM APIs. However, to protect proprietary behavior and reduce verbosity, providers typically conceal the reasoning traces while returning only the final answer. This opacity introduces a critical transparency gap: users are billed for invisible reasoning tokens, which often account for the majority of the cost, yet have no means to verify their authenticity. This opens the door to token count manipulation, where providers may overreport token usage or inject synthetic, low-effort tokens to inflate charges, a threat that can be carried out at near-zero cost. To address this issue, we propose CoIn, a verification framework that audits both the quantity and semantic validity of hidden tokens. CoIn constructs a verifiable hash tree from token embedding fingerprints to check token counts, and uses embedding-based relevance matching to detect fabricated reasoning content. Experiments demonstrate that CoIn, when deployed as a trusted third-party auditor, can effectively detect token count manipulation with a success rate reaching up to 94.7%, demonstrating a strong ability to restore billing transparency in opaque LLM services. The dataset and code are available at https://github.com/CASE-Lab-UMD/LLM-Auditing-CoIn .

The Mixture of Depths (MoD) was introduced to improve computational efficiency by dynamically skipping less important layers, reducing redundant computation while maintaining model capacity. Despite its promise, existing MoD approaches remain under-explored and face two main challenges: (1) high training costs due to the need to train the entire model along with the routers that determine which layers to skip, and (2) performance degradation when important layers are bypassed. In response to the first issue, we propose Router-Tuning, which fine-tunes only the routers on a small dataset, drastically reducing the computational overhead associated with full model training. For the second challenge, we investigate across different architectures and granularities, demonstrating its effectiveness on Attention layers and MoE layers. This method preserves the model’s performance while significantly enhancing computational and memory efficiency. Extensive experiments demonstrate that our approach delivers competitive results while dramatically improving the computation efficiency, e.g., 21% speedup and only a 0.2% performance drop. The code will be released upon acceptance.