Chenchen Ye


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A Novel Framework Based on Medical Concept Driven Attention for Explainable Medical Code Prediction via External Knowledge
Tao Wang | Linhai Zhang | Chenchen Ye | Junxi Liu | Deyu Zhou
Findings of the Association for Computational Linguistics: ACL 2022

Medical code prediction from clinical notes aims at automatically associating medical codes with the clinical notes. Rare code problem, the medical codes with low occurrences, is prominent in medical code prediction. Recent studies employ deep neural networks and the external knowledge to tackle it. However, such approaches lack interpretability which is a vital issue in medical application. Moreover, due to the lengthy and noisy clinical notes, such approaches fail to achieve satisfactory results. Therefore, in this paper, we propose a novel framework based on medical concept driven attention to incorporate external knowledge for explainable medical code prediction. In specific, both the clinical notes and Wikipedia documents are aligned into topic space to extract medical concepts using topic modeling. Then, the medical concept-driven attention mechanism is applied to uncover the medical code related concepts which provide explanations for medical code prediction. Experimental results on the benchmark dataset show the superiority of the proposed framework over several state-of-the-art baselines.


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Beyond Text: Incorporating Metadata and Label Structure for Multi-Label Document Classification using Heterogeneous Graphs
Chenchen Ye | Linhai Zhang | Yulan He | Deyu Zhou | Jie Wu
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing

Multi-label document classification, associating one document instance with a set of relevant labels, is attracting more and more research attention. Existing methods explore the incorporation of information beyond text, such as document metadata or label structure. These approaches however either simply utilize the semantic information of metadata or employ the predefined parent-child label hierarchy, ignoring the heterogeneous graphical structures of metadata and labels, which we believe are crucial for accurate multi-label document classification. Therefore, in this paper, we propose a novel neural network based approach for multi-label document classification, in which two heterogeneous graphs are constructed and learned using heterogeneous graph transformers. One is metadata heterogeneous graph, which models various types of metadata and their topological relations. The other is label heterogeneous graph, which is constructed based on both the labels’ hierarchy and their statistical dependencies. Experimental results on two benchmark datasets show the proposed approach outperforms several state-of-the-art baselines.

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A Divide-And-Conquer Approach for Multi-label Multi-hop Relation Detection in Knowledge Base Question Answering
Deyu Zhou | Yanzheng Xiang | Linhai Zhang | Chenchen Ye | Qian-Wen Zhang | Yunbo Cao
Findings of the Association for Computational Linguistics: EMNLP 2021

Relation detection in knowledge base question answering, aims to identify the path(s) of relations starting from the topic entity node that is linked to the answer node in knowledge graph. Such path might consist of multiple relations, which we call multi-hop. Moreover, for a single question, there may exist multiple relation paths to the correct answer, which we call multi-label. However, most of existing approaches only detect one single path to obtain the answer without considering other correct paths, which might affect the final performance. Therefore, in this paper, we propose a novel divide-and-conquer approach for multi-label multi-hop relation detection (DC-MLMH) by decomposing it into head relation detection and conditional relation path generation. In specific, a novel path sampling mechanism is proposed to generate diverse relation paths for the inference stage. A majority-vote policy is employed to detect final KB answer. Comprehensive experiments were conducted on the FreebaseQA benchmark dataset. Experimental results show that the proposed approach not only outperforms other competitive multi-label baselines, but also has superiority over some state-of-art KBQA methods.


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Neural Topic Modeling with Bidirectional Adversarial Training
Rui Wang | Xuemeng Hu | Deyu Zhou | Yulan He | Yuxuan Xiong | Chenchen Ye | Haiyang Xu
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics

Recent years have witnessed a surge of interests of using neural topic models for automatic topic extraction from text, since they avoid the complicated mathematical derivations for model inference as in traditional topic models such as Latent Dirichlet Allocation (LDA). However, these models either typically assume improper prior (e.g. Gaussian or Logistic Normal) over latent topic space or could not infer topic distribution for a given document. To address these limitations, we propose a neural topic modeling approach, called Bidirectional Adversarial Topic (BAT) model, which represents the first attempt of applying bidirectional adversarial training for neural topic modeling. The proposed BAT builds a two-way projection between the document-topic distribution and the document-word distribution. It uses a generator to capture the semantic patterns from texts and an encoder for topic inference. Furthermore, to incorporate word relatedness information, the Bidirectional Adversarial Topic model with Gaussian (Gaussian-BAT) is extended from BAT. To verify the effectiveness of BAT and Gaussian-BAT, three benchmark corpora are used in our experiments. The experimental results show that BAT and Gaussian-BAT obtain more coherent topics, outperforming several competitive baselines. Moreover, when performing text clustering based on the extracted topics, our models outperform all the baselines, with more significant improvements achieved by Gaussian-BAT where an increase of near 6% is observed in accuracy.