Chih-Jen Huang
2020
Cancer Registry Information Extraction via Transfer Learning
Yan-Jie Lin
|
Hong-Jie Dai
|
You-Chen Zhang
|
Chung-Yang Wu
|
Yu-Cheng Chang
|
Pin-Jou Lu
|
Chih-Jen Huang
|
Yu-Tsang Wang
|
Hui-Min Hsieh
|
Kun-San Chao
|
Tsang-Wu Liu
|
I-Shou Chang
|
Yi-Hsin Connie Yang
|
Ti-Hao Wang
|
Ko-Jiunn Liu
|
Li-Tzong Chen
|
Sheau-Fang Yang
Proceedings of the 3rd Clinical Natural Language Processing Workshop
A cancer registry is a critical and massive database for which various types of domain knowledge are needed and whose maintenance requires labor-intensive data curation. In order to facilitate the curation process for building a high-quality and integrated cancer registry database, we compiled a cross-hospital corpus and applied neural network methods to develop a natural language processing system for extracting cancer registry variables buried in unstructured pathology reports. The performance of the developed networks was compared with various baselines using standard micro-precision, recall and F-measure. Furthermore, we conducted experiments to study the feasibility of applying transfer learning to rapidly develop a well-performing system for processing reports from different sources that might be presented in different writing styles and formats. The results demonstrate that the transfer learning method enables us to develop a satisfactory system for a new hospital with only a few annotations and suggest more opportunities to reduce the burden of cancer registry curation.
Search
Co-authors
- Yan-Jie Lin 1
- Hong-Jie Dai 1
- You-Chen Zhang 1
- Chung-Yang Wu 1
- Yu-Cheng Chang 1
- show all...