Griffin Adams


2023

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Overview of the MEDIQA-Chat 2023 Shared Tasks on the Summarization & Generation of Doctor-Patient Conversations
Asma Ben Abacha | Wen-wai Yim | Griffin Adams | Neal Snider | Meliha Yetisgen
Proceedings of the 5th Clinical Natural Language Processing Workshop

Automatic generation of clinical notes from doctor-patient conversations can play a key role in reducing daily doctors’ workload and improving their interactions with the patients. MEDIQA-Chat 2023 aims to advance and promote research on effective solutions through shared tasks on the automatic summarization of doctor-patient conversations and on the generation of synthetic dialogues from clinical notes for data augmentation. Seventeen teams participated in the challenge and experimented with a broad range of approaches and models. In this paper, we describe the three MEDIQA-Chat 2023 tasks, the datasets, and the participants’ results and methods. We hope that these shared tasks will lead to additional research efforts and insights on the automatic generation and evaluation of clinical notes.

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From Sparse to Dense: GPT-4 Summarization with Chain of Density Prompting
Griffin Adams | Alex Fabbri | Faisal Ladhak | Eric Lehman | Noémie Elhadad
Proceedings of the 4th New Frontiers in Summarization Workshop

Selecting the “right” amount of information to include in a summary is a difficult task. A good summary should be detailed and entity-centric without being overly dense and hard to follow. To better understand this tradeoff, we solicit increasingly dense GPT-4 summaries with what we refer to as a “Chain of Density” (CoD) prompt. Specifically, GPT-4 generates an initial entity-sparse summary before iteratively incorporating missing salient entities without increasing the length. Summaries generated by CoD are more abstractive, exhibit more fusion, and have less of a lead bias than GPT-4 summaries generated by a vanilla prompt. We conduct a human preference study on 100 CNN DailyMail articles and find that humans prefer GPT-4 summaries that are more dense than those generated by a vanilla prompt and almost as dense as human written summaries. Qualitative analysis supports the notion that there exists a tradeoff between informativeness and readability. 500 annotated CoD summaries, as well as an extra 5,000 unannotated summaries, are freely available on HuggingFace (https://huggingface.co/datasets/griffin/chain_of_density).

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Generating EDU Extracts for Plan-Guided Summary Re-Ranking
Griffin Adams | Alex Fabbri | Faisal Ladhak | Noémie Elhadad | Kathleen McKeown
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Two-step approaches, in which summary candidates are generated-then-reranked to return a single summary, can improve ROUGE scores over the standard single-step approach. Yet, standard decoding methods (i.e., beam search, nucleus sampling, and diverse beam search) produce candidates with redundant, and often low quality, content. In this paper, we design a novel method to generate candidates for re-ranking that addresses these issues. We ground each candidate abstract on its own unique content plan and generate distinct plan-guided abstracts using a model’s top beam. More concretely, a standard language model (a BART LM) auto-regressively generates elemental discourse unit (EDU) content plans with an extractive copy mechanism. The top K beams from the content plan generator are then used to guide a separate LM, which produces a single abstractive candidate for each distinct plan. We apply an existing re-ranker (BRIO) to abstractive candidates generated from our method, as well as baseline decoding methods. We show large relevance improvements over previously published methods on widely used single document news article corpora, with ROUGE-2 F1 gains of 0.88, 2.01, and 0.38 on CNN / Dailymail, NYT, and Xsum, respectively. A human evaluation on CNN / DM validates these results. Similarly, on 1k samples from CNN / DM, we show that prompting GPT-3 to follow EDU plans outperforms sampling-based methods by by 1.05 ROUGE-2 F1 points. Code to generate and realize plans is available at https://github.com/griff4692/edu-sum.

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What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization
Griffin Adams | Bichlien Nguyen | Jake Smith | Yingce Xia | Shufang Xie | Anna Ostropolets | Budhaditya Deb | Yuan-Jyue Chen | Tristan Naumann | Noémie Elhadad
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Summarization models often generate text that is poorly calibrated to quality metrics because they are trained to maximize the likelihood of a single reference (MLE). To address this, recent work has added a calibration step, which exposes a model to its own ranked outputs to improve relevance or, in a separate line of work, contrasts positive and negative sets to improve faithfulness. While effective, much of this work has focused on how to generate and optimize these sets. Less is known about why one setup is more effective than another. In this work, we uncover the underlying characteristics of effective sets. For each training instance, we form a large, diverse pool of candidates and systematically vary the subsets used for calibration fine-tuning. Each selection strategy targets distinct aspects of the sets, such as lexical diversity or the size of the gap between positive and negatives. On three diverse scientific long-form summarization datasets (spanning biomedical, clinical, and chemical domains), we find, among others, that faithfulness calibration is optimal when the negative sets are extractive and more likely to be generated, whereas for relevance calibration, the metric margin between candidates should be maximized and surprise–the disagreement between model and metric defined candidate rankings–minimized.

2022

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Learning to Revise References for Faithful Summarization
Griffin Adams | Han-Chin Shing | Qing Sun | Christopher Winestock | Kathleen McKeown | Noémie Elhadad
Findings of the Association for Computational Linguistics: EMNLP 2022

In real-world scenarios with naturally occurring datasets, reference summaries are noisy and may contain information that cannot be inferred from the source text. On large news corpora, removing low quality samples has been shown to reduce model hallucinations. Yet, for smaller, and/or noisier corpora, filtering is detrimental to performance. To improve reference quality while retaining all data, we propose a new approach: to selectively re-write unsupported reference sentences to better reflect source data. We automatically generate a synthetic dataset of positive and negative revisions by corrupting supported sentences and learn to revise reference sentences with contrastive learning. The intensity of revisions is treated as a controllable attribute so that, at inference, diverse candidates can be over-generated-then-rescored to balance faithfulness and abstraction. To test our methods, we extract noisy references from publicly available MIMIC-III discharge summaries for the task of hospital-course summarization, and vary the data on which models are trained. According to metrics and human evaluation, models trained on revised clinical references are much more faithful, informative, and fluent than models trained on original or filtered data.

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Investigating Crowdsourcing Protocols for Evaluating the Factual Consistency of Summaries
Xiangru Tang | Alexander Fabbri | Haoran Li | Ziming Mao | Griffin Adams | Borui Wang | Asli Celikyilmaz | Yashar Mehdad | Dragomir Radev
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies

Current pre-trained models applied for summarization are prone to factual inconsistencies that misrepresent the source text. Evaluating the factual consistency of summaries is thus necessary to develop better models. However, the human evaluation setup for evaluating factual consistency has not been standardized. To determine the factors that affect the reliability of the human evaluation, we crowdsource evaluations for factual consistency across state-of-the-art models on two news summarization datasets using the rating-based Likert Scale and ranking-based Best-Worst Scaling. Our analysis reveals that the ranking-based Best-Worst Scaling offers a more reliable measure of summary quality across datasets and that the reliability of Likert ratings highly depends on the target dataset and the evaluation design. To improve crowdsourcing reliability, we extend the scale of the Likert rating and present a scoring algorithm for Best-Worst Scaling that we call value learning. Our crowdsourcing guidelines will be publicly available to facilitate future work on factual consistency in summarization.

2021

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What’s in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization
Griffin Adams | Emily Alsentzer | Mert Ketenci | Jason Zucker | Noémie Elhadad
Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies

Summarization of clinical narratives is a long-standing research problem. Here, we introduce the task of hospital-course summarization. Given the documentation authored throughout a patient’s hospitalization, generate a paragraph that tells the story of the patient admission. We construct an English, text-to-text dataset of 109,000 hospitalizations (2M source notes) and their corresponding summary proxy: the clinician-authored “Brief Hospital Course” paragraph written as part of a discharge note. Exploratory analyses reveal that the BHC paragraphs are highly abstractive with some long extracted fragments; are concise yet comprehensive; differ in style and content organization from the source notes; exhibit minimal lexical cohesion; and represent silver-standard references. Our analysis identifies multiple implications for modeling this complex, multi-document summarization task.