Retrieval-Augmented Generation (RAG) systems combine dense retrievers and language models to ground outputs in external documents. However, the interaction between these components remains opaque, creating challenges for deployment in high-stakes domains. We present RAG-E, an end-to-end explainability framework that quantifies retriever-generator alignment through mathematically grounded attribution methods. Our approach adapts Integrated Gradients for retriever analysis, proposes a Monte Carlo-stabilized Shapley Value approximation for generator attribution, and introduces the *Weighted Alignment between Retriever and Generator* (WARG) metric to measure how closely the generator’s document usage aligns with retriever rankings. Experiments on PopQA, QAMPARI, and TREC CAST datasets reveal substantial misalignment: depending on the model and setting, generators often ignore top-ranked documents and rely on documents ranked as less relevant. We show that WARG captures retriever-generator alignment better than Pearson and Spearman correlations and can serve as an indicator of RAG performance. RAG-E and WARG provide a practical framework for auditing this interaction, enabling more reliable and transparent RAG systems.

Food safety demands timely detection, regulation, and public communication, yet the lack of structured datasets hinders Natural Language Processing (NLP) research. We present and release a new dataset of human-written and Large Language Model (LLM)-generated summaries of food safety documents, plus food safety related metadata. We evaluate its utility on three NLP tasks directly reflecting food safety practices: multilabel classification for organizing documents into domain-specific categories; document retrieval for accessing regulatory and scientific evidence; and question answering via retrieval-augmented generation that improves factual accuracy.We show that LLM summaries perform comparably or better than human ones across tasks. We also demonstrate clustering of summaries for event tracking and compliance monitoring. This dataset enables NLP applications that support core food safety practices, including the organization of regulatory and scientific evidence, monitoring of compliance issues, and communication of risks to the public.