ChatGPT is a large language model developed by OpenAI. Despite its impressive performance across various tasks, no prior work has investigated its capability in the biomedical domain yet. To this end, this paper aims to evaluate the performance of ChatGPT on various benchmark biomedical tasks, such as relation extraction, document classification, question answering, and summarization. To the best of our knowledge, this is the first work that conducts an extensive evaluation of ChatGPT in the biomedical domain. Interestingly, we find based on our evaluation that in biomedical datasets that have smaller training sets, zero-shot ChatGPT even outperforms the state-of-the-art fine-tuned generative transformer models, such as BioGPT and BioBART. This suggests that ChatGPT’s pre-training on large text corpora makes it quite specialized even in the biomedical domain. Our findings demonstrate that ChatGPT has the potential to be a valuable tool for various tasks in the biomedical domain that lack large annotated data.

Debatepedia is a publicly available dataset consisting of arguments and counter-arguments on controversial topics that has been widely used for the single-document query-focused abstractive summarization task in recent years. However, it has been recently found that this dataset is limited by noise and even most queries in this dataset do not have any relevance to the respective document. In this paper, we study whether large language models (LLMs) can be utilized to clean the Debatepedia dataset to make it suitable for query-focused abstractive summarization. More specifically, we harness the language generation capabilities of two LLMs, namely, ChatGPT and PaLM to regenerate its queries. Based on our experiments, we find that solely depending on large language models for query correction may not be very useful for data cleaning. However, we observe that leveraging a rule-based approach for data sampling followed by query regeneration using LLMs (especially ChatGPT) for the sampled instances may ensure a higher quality version of this dataset suitable for the development of more generalized query-focused text summarization models.