Jingjing Fu

Author directory

2026

In clinical tabular prediction, classical machine learning models with feature engineering often outperform neural methods. LLMs are increasingly used to automate this process, acting as domain experts that propose diverse feature transformations to boost downstream performance. However, the feature generation process of existing LLM-based methods is agnostic to the downstream learner: the LLM receives no signal about which features currently drive predictions or where the model’s representational capacity falls short, so proposals are neither targeted to promising regions of the feature space nor tailored to the learner’s inductive bias. This shortcoming is amplified in healthcare data, which simultaneously exhibits class imbalance, heterogeneous feature spaces, and strict interpretability requirements. In this paper, we propose MedFeat, the first feature engineering framework inspired by the workflow of machine learning practitioners, leveraging model-awareness and feature importance signals to iteratively guide feature discovery for clinical tabular learning. We evaluate MedFeat on a broad range of challenging real-world clinical tasks and show that it statistically significantly outperforms state-of-the-art baselines, with an average F1 improvement of more than 10% over the baseline across models with distinct inductive biases.

2025

Visual reasoning is crucial for multimodal large language models (MLLMs) to address complex chart queries, yet high-quality rationale data remains scarce. Existing methods leveraged (M)LLMs for data generation, but direct prompting often yields limited precision and diversity. In this paper, we propose Chain of Functions (CoF), a novel programmatic reasoning data generation pipeline that utilizes freely-explored reasoning paths as supervision to ensure data precision and diversity. Specifically, it starts with human-free exploration among the atomic functions (e.g., maximum data and arithmetic operations) to generate diverse function chains, which are then translated into linguistic rationales and questions with only a moderate open-sourced LLM. CoF provides multiple benefits: 1) Precision: function-governed generation reduces hallucinations compared to freeform generation; 2) Diversity: enumerating function chains enables varied question taxonomies; 3) Explainability: function chains serve as built-in rationales, allowing fine-grained evaluation beyond overall accuracy; 4) Practicality: it eliminates reliance on extremely large models. Employing CoF, we construct the ChartCoF dataset, with 1.4k complex reasoning Q&A for fine-grained analysis and 50k Q&A for reasoning enhancement.Experiments show that ChartCoF improves performance for MLLMs on widely used benchmarks, and the fine-grained evaluation on ChartCoF reveals varying performance across question taxonomies and step numbers for each MLLM. Furthermore, the novel paradigm of function-governed rationale generation in CoF could inspire broader applications beyond charts. The code and data have been publicly available at https://github.com/microsoft/Chain-of-Functions.
Vision-language retrieval-augmented generation (RAG) has become an effective approach for tackling Knowledge-Based Visual Question Answering (KB-VQA), which requires external knowledge beyond the visual content presented in images. The effectiveness of Vision-language RAG systems hinges on multimodal retrieval, which is inherently challenging due to the diverse modalities and knowledge granularities in both queries and knowledge bases. Existing methods have not fully tapped into the potential interplay between these elements. We propose a multimodal RAG system featuring a coarse-to-fine, multi-step retrieval that harmonizes multiple granularities and modalities to enhance efficacy. Our system begins with a broad initial search aligning knowledge granularity for cross-modal retrieval, followed by a multimodal fusion reranking to capture the nuanced multimodal information for top entity selection. A text reranker then filters out the most relevant fine-grained section for augmented generation. Extensive experiments on the InfoSeek and Encyclopedic-VQA benchmarks show our method achieves state-of-the-art retrieval performance and highly competitive answering results, underscoring its effectiveness in advancing KB-VQA systems. Our code can be found at https://github.com/ChaoLinAViy/OMGM.