Relation Extraction (RE) has been extended to cross-document scenarios because many relations are not simply described in a single document. This inevitably brings the challenge of efficient open-space evidence retrieval to support the inference of cross-document relations,along with the challenge of multi-hop reasoning on top of entities and evidence scattered in an open set of documents. To combat these challenges, we propose Mr.Cod (Multi-hop evidence retrieval for Cross-document relation extraction), which is a multi-hop evidence retrieval method based on evidence path mining and ranking. We explore multiple variants of retrievers to show evidence retrieval is essential in cross-document RE.We also propose a contextual dense retriever for this setting. Experiments on CodRED show that evidence retrieval with Mr.Cod effectively acquires cross-document evidence and boosts end-to-end RE performance in both closed and open settings.

This work considers the problem of Open-world Entity Profiling, a sub-domain of Open-world Information Extraction (Open-world IE). Unlike the conventional closed-world IE, Open-world IE is considered a more general situation where entities and relations could be beyond a predefined ontology. We seek to develop a large language model (LLM) that can perform Open-world Entity Profiling with instruction tuning to extract desirable entity profiles characterized by (possibly fine-grained) natural language instructions. In particular, we construct INSTRUCTOPENWIKI, a substantial instruction-tuning dataset for Open-world Entity Profiling enriched with a comprehensive corpus, extensive annotations, and diverse instructions. We finetune pretrained BLOOM models on INSTRUCTOPENWIKI and obtain PIVOINE, an LLM for Open-world Entity Profiling with strong instruction-following capabilities. Our experiments demonstrate that PIVOINE significantly outperforms traditional methods and ChatGPT-based baselines, displaying impressive generalization capabilities on both unseen instructions and out-of-ontology cases. Consequently, PIVOINE emerges as a promising solution to tackle the open-world challenge of entity profiling.

Biomedical entity linking (EL) consists of named entity recognition (NER) and named entity disambiguation (NED). EL models are trained on corpora labeled by a predefined KB. However, it is a common scenario that only entities within a subset of the KB are precious to stakeholders. We name this scenario partial knowledge base inference; training an EL model with one KB and inferring on the part of it without further training. In this work, we give a detailed definition and evaluation procedures for this practically valuable but significantly understudied scenario and evaluate methods from three representative EL paradigms. We construct partial KB inference benchmarks and witness a catastrophic degradation in EL performance due to dramatically precision drop. Our findings reveal these EL paradigms can not correctly handle unlinkable mentions (NIL), so they are not robust to partial KB inference. We also propose two simple-and-effective redemption methods to combat the NIL issue with little computational overhead.

Prompt tuning offers an efficient approach to domain adaptation for pretrained language models, which predominantly focus on masked language modeling or generative objectives. However, the potential of discriminative language models in biomedical tasks remains underexplored.To bridge this gap, we develop BioDLM, a method tailored for biomedical domain adaptation of discriminative language models that incorporates prompt-based continual pretraining and prompt tuning for downstream tasks. BioDLM aims to maximize the potential of discriminative language models in low-resource scenarios by reformulating these tasks as span-level corruption detection, thereby enhancing performance on domain-specific tasks and improving the efficiency of continual pertaining. In this way, BioDLM provides a data-efficient domain adaptation method for discriminative language models, effectively enhancing performance on discriminative tasks within the biomedical domain.

Relation extraction (RE) models have been challenged by their reliance on training data with expensive annotations. Considering that summarization tasks aim at acquiring concise expressions of synoptical information from the longer context, these tasks naturally align with the objective of RE, i.e., extracting a kind of synoptical information that describes the relation of entity mentions. We present SuRE, which converts RE into a summarization formulation. SuRE leads to more precise and resource-efficient RE based on indirect supervision from summarization tasks. To achieve this goal, we develop sentence and relation conversion techniques that essentially bridge the formulation of summarization and RE tasks. We also incorporate constraint decoding techniques with Trie scoring to further enhance summarization-based RE with robust inference. Experiments on three RE datasets demonstrate the effectiveness of SuRE in both full-dataset and low-resource settings, showing that summarization is a promising source of indirect supervision signals to improve RE models.