We explore whether state-of-the-art BERT models encode sufficient domain knowledge to correctly perform domain-specific inference. Although BERT implementations such as BioBERT are better at domain-based reasoning than those trained on general-domain corpora, there is still a wide margin compared to human performance on these tasks. To bridge this gap, we explore whether supplementing textual domain knowledge in the medical NLI task: a) by further language model pretraining on the medical domain corpora, b) by means of lexical match algorithms such as the BM25 algorithm, c) by supplementing lexical retrieval with dependency relations, or d) by using a trained retriever module, can push this performance closer to that of humans. We do not find any significant difference between knowledge supplemented classification as opposed to the baseline BERT models, however. This is contrary to the results for evidence retrieval on other tasks such as open domain question answering (QA). By examining the retrieval output, we show that the methods fail due to unreliable knowledge retrieval for complex domain-specific reasoning. We conclude that the task of unsupervised text retrieval to bridge the gap in existing information to facilitate inference is more complex than what the state-of-the-art methods can solve, and warrants extensive research in the future.

Several previous studies on explanation for recurrent neural networks focus on approaches that find the most important input segments for a network as its explanations. In that case, the manner in which these input segments combine with each other to form an explanatory pattern remains unknown. To overcome this, some previous work tries to find patterns (called rules) in the data that explain neural outputs. However, their explanations are often insensitive to model parameters, which limits the scalability of text explanations. To overcome these limitations, we propose a pipeline to explain RNNs by means of decision lists (also called rules) over skipgrams. For evaluation of explanations, we create a synthetic sepsis-identification dataset, as well as apply our technique on additional clinical and sentiment analysis datasets. We find that our technique persistently achieves high explanation fidelity and qualitatively interpretable rules.

Understanding the behavior of a trained network and finding explanations for its outputs is important for improving the network’s performance and generalization ability, and for ensuring trust in automated systems. Several approaches have previously been proposed to identify and visualize the most important features by analyzing a trained network. However, the relations between different features and classes are lost in most cases. We propose a technique to induce sets of if-then-else rules that capture these relations to globally explain the predictions of a network. We first calculate the importance of the features in the trained network. We then weigh the original inputs with these feature importance scores, simplify the transformed input space, and finally fit a rule induction model to explain the model predictions. We find that the output rule-sets can explain the predictions of a neural network trained for 4-class text classification from the 20 newsgroups dataset to a macro-averaged F-score of 0.80. We make the code available at https://github.com/clips/interpret_with_rules.

Recently, segment convolutional neural networks have been proposed for end-to-end relation extraction in the clinical domain, achieving results comparable to or outperforming the approaches with heavy manual feature engineering. In this paper, we analyze the errors made by the neural classifier based on confusion matrices, and then investigate three simple extensions to overcome its limitations. We find that including ontological association between drugs and problems, and data-induced association between medical concepts does not reliably improve the performance, but that large gains are obtained by the incorporation of semantic classes to capture relation triggers.