This paper presents the MEDIQA-Chat 2023 shared task organized at the ACL-Clinical NLP workshop. The shared task is motivated by the need to develop methods to automatically generate clinical notes from doctor-patient conversations. In this paper, we present our submission for MEDIQA-Chat 2023 Task A: Short Dialogue2Note Summarization. Manual creation of these clinical notes requires extensive human efforts, thus making it a time-consuming and expensive process. To address this, we propose an ensemble-based method over GPT-3, BART, BERT variants, and Rule-based systems to automatically generate clinical notes from these conversations. The proposed system achieves a score of 0.730 and 0.544 for both the sub-tasks on the test set (ranking 8th on the leaderboard for both tasks) and shows better performance compared to a baseline system using BART variants.

Most transformer models are trained on English language corpus that contain text from forums like Wikipedia and Reddit. While these models are being used in many specialized domains such as scientific peer review, legal, and healthcare, their performance is subpar because they do not contain the information present in data relevant to such specialized domains. To help these models perform as well as possible on specialized domains, one of the approaches is to collect labeled data of that particular domain and fine-tune the transformer model of choice on such data. While a good approach, it suffers from the challenge of collecting a lot of labeled data which requires significant manual effort. Another way is to use unlabeled domain-specific data to pre-train these transformer model and then fine-tune this model on labeled data. We evaluate how transformer models perform when fine-tuned on labeled data after initial pre-training with unlabeled data. We compare their performance with a transformer model fine-tuned on labeled data without initial pre-training with unlabeled data. We perform this comparison on a dataset of Scientific Peer Reviews provided by organizers of PragTag-2023 Shared Task and observe that a transformer model fine-tuned on labeled data after initial pre-training on unlabeled data using Masked Language Modelling outperforms a transformer model fine-tuned only on labeled data without initial pre-training with unlabeled data using Masked Language Modelling.