Peiyuan Cao

Author directory

2026

Large language models (LLMs) can propose vaccine adjuvant designs with plausible mechanistic rationales, but such outputs often lack grounding in established immunological knowledge. We present SAVANT, a neuro-symbolic framework for LLM-based adjuvant design that combines two-stage constrained generation with literature-grounded verification. SAVANT first generates a natural-language design rationale, then renders it into an ontology-constrained domain-specific language (DSL) using logic masks and finite-state control. To reason under fragmented evidence and incomplete first-principles rules, SAVANT verifies generated designs against literature-derived symbolic evidence through minimal sub-theorem proof. In expert-aligned evaluation, SAVANT shows greater stability in stage-level rank alignment than the strongest LLM-judge baselines, while achieving the strongest alignment for immune-effect support and mechanistic reasoning. SAVANT provides graded, interpretable assessments that distinguish supported mechanisms, under-supported hypotheses, and knowledge gaps for hypothesis-driven experimentation. Data and code will be released at https://github.com/banjiuyufen/SAVANT.