Richard Beare
2023
Leveraging Natural Language Processing and Clinical Notes for Dementia Detection
Ming Liu
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Richard Beare
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Taya Collyer
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Nadine Andrew
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Velandai Srikanth
Proceedings of the 5th Clinical Natural Language Processing Workshop
Early detection and automated classification of dementia has recently gained considerable attention using neuroimaging data and spontaneous speech. In this paper, we validate the possibility of dementia detection with in-hospital clinical notes. We collected 954 patients’ clinical notes from a local hospital and assign dementia/non-dementia labels to those patients based on clinical assessment and telephone interview. Given the labeled dementia data sets, we fine tune a ClinicalBioBERT based on some filtered clinical notes and conducted experiments on both binary and three class dementia classification. Our experiment results show that the fine tuned ClinicalBioBERT achieved satisfied performance on binary classification but failed on three class dementia classification. Further analysis suggests that more human prior knowledge should be considered.
2022
Hardness-guided domain adaptation to recognise biomedical named entities under low-resource scenarios
Ngoc Dang Nguyen
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Lan Du
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Wray Buntine
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Changyou Chen
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Richard Beare
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing
Domain adaptation is an effective solution to data scarcity in low-resource scenarios. However, when applied to token-level tasks such as bioNER, domain adaptation methods often suffer from the challenging linguistic characteristics that clinical narratives possess, which leads to unsatsifactory performance. In this paper, we present a simple yet effective hardness-guided domain adaptation framework for bioNER tasks that can effectively leverage the domain hardness information to improve the adaptability of the learnt model in the low-resource scenarios. Experimental results on biomedical datasets show that our model can achieve significant performance improvement over the recently published state-of-the-art (SOTA) MetaNER model.
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Co-authors
- Ming Liu 1
- Taya Collyer 1
- Nadine Andrew 1
- Velandai Srikanth 1
- Ngoc Dang Nguyen 1
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