As scientific literature grows and papers increasingly under-report limitations, multi-agent LLMs offer a promising approach to systematically uncover these hidden failure modes. Here, we introduce Tree-of-Concerns, a multi-agent framework that deploys specialized skeptic personas, each operating through a category-specific analytical lens, as parallel debate trees to extract unstated limitations from scientific papers. Each persona conducts structured, evidence-grounded argumentation, while a Panel Review mechanism re-evaluates each surviving claim from all five perspectives to correct category drift and severity miscalibration. Through retrieval-free, single-paper experiments on ToC-Bench, our benchmark of 414 research papers with 1,905 unstated limitations, sourced from reviewer-reported weaknesses and follow-up citation critiques, we demonstrate that ToC improves precision by 79% and coverage by 11% relative to the strongest baseline, surfacing specific, evidence-grounded concerns that support reviewers in systematic evaluation.

Taxonomies are hierarchical knowledge graphs crucial for recommendation systems, and web applications. As data grows, expanding taxonomies is essential, but existing methods face key challenges: (1) discriminative models struggle with representation limits and generalization, while (2) generative methods either process all candidates at once, introducing noise and exceeding context limits, or discard relevant entities by selecting noisy candidates. We propose LORex (Lineage-Oriented Reasoning for Taxonomy Expansion), a plug-and-play framework that combines discriminative ranking and generative reasoning for efficient taxonomy expansion. Unlike prior methods, LORex ranks and chunks candidate terms into batches, filtering noise and iteratively refining selections by reasoning candidates’ hierarchy to ensure contextual efficiency. Extensive experiments across four benchmarks and twelve baselines show that LORex improves accuracy by 12% and Wu & Palmer similarity by 5% over state-of-the-art methods.