Representation learning is fundamental to NLP, but building embeddings that work well at different computational budgets is challenging. Matryoshka Representation Learning (MRL) offers a flexible inference paradigm through nested embeddings; however, learning such structures requires explicit coordination of how information is arranged across embedding dimensionality and model depth. In this work, we propose MIPIC (Matryoshka Representation Learning via Self-Distilled Intra-Relational Alignment and Progressive Information Chaining), a unified training framework designed to produce structurally coherent and semantically compact Matryoshka representations. MIPIC promotes cross-dimensional structural consistency through Self-Distilled Intra-Relational Alignment (SIA), which aligns token-level geometric and attention-driven relations between full and truncated representations using top-k CKA self-distillation. Complementarily, it enables depth-wise semantic consolidation via Progressive Information Chaining (PIC), a scaffolded alignment strategy that incrementally transfers mature task semantics from deeper layers into earlier layers. Extensive experiments on STS, NLI, and classification benchmarks (spanning models from TinyBERT to BGEM3, Qwen3) demonstrate that MIPIC yields Matryoshka representations that are highly competitive across all capacities, with significant performance advantages observed under extreme low-dimensional.

Knowledge distillation is a key technique for compressing large language models (LLMs), but most existing methods align representations at fixed layers or token-level outputs, ignoring how representations evolve across depth. As a result, the student is only weakly guided to capture the teacher’s internal relational structure during distillation, which limits knowledge transfer. To address this limitation, we propose Multi-Granular Trajectory Alignment (MTA), a framework that aligns teacher and student representations along their layer-wise transformation trajectory. MTA adopts a layer-adaptive strategy: lower layers are aligned at the word level to preserve lexical information, while higher layers operate on phrase-level spans (e.g., noun and verb phrases) to capture compositional semantics. We instantiate this idea through a Dynamic Structural Alignment loss that matches the relative geometry among semantic units within each layer. This design is motivated by empirical findings that Transformer representations become increasingly abstract with depth, and is also consistent with linguistic views in which higher-level meaning emerges through the composition of lower-level lexical units. We further incorporate a Hidden Representation Alignment loss to directly align selected teacher–student layers. Experiments show that MTA consistently outperforms state-of-the-art baselines on standard benchmarks, with ablations confirming the contribution of each component.