Yassine M’rabet

Also published as: Yassine Mrabet


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Overview of the MEDIQA 2021 Shared Task on Summarization in the Medical Domain
Asma Ben Abacha | Yassine Mrabet | Yuhao Zhang | Chaitanya Shivade | Curtis Langlotz | Dina Demner-Fushman
Proceedings of the 20th Workshop on Biomedical Language Processing

The MEDIQA 2021 shared tasks at the BioNLP 2021 workshop addressed three tasks on summarization for medical text: (i) a question summarization task aimed at exploring new approaches to understanding complex real-world consumer health queries, (ii) a multi-answer summarization task that targeted aggregation of multiple relevant answers to a biomedical question into one concise and relevant answer, and (iii) a radiology report summarization task addressing the development of clinically relevant impressions from radiology report findings. Thirty-five teams participated in these shared tasks with sixteen working notes submitted (fifteen accepted) describing a wide variety of models developed and tested on the shared and external datasets. In this paper, we describe the tasks, the datasets, the models and techniques developed by various teams, the results of the evaluation, and a study of correlations among various summarization evaluation measures. We hope that these shared tasks will bring new research and insights in biomedical text summarization and evaluation.

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Evidence-based Fact-Checking of Health-related Claims
Mourad Sarrouti | Asma Ben Abacha | Yassine Mrabet | Dina Demner-Fushman
Findings of the Association for Computational Linguistics: EMNLP 2021

The task of verifying the truthfulness of claims in textual documents, or fact-checking, has received significant attention in recent years. Many existing evidence-based factchecking datasets contain synthetic claims and the models trained on these data might not be able to verify real-world claims. Particularly few studies addressed evidence-based fact-checking of health-related claims that require medical expertise or evidence from the scientific literature. In this paper, we introduce HEALTHVER, a new dataset for evidence-based fact-checking of health-related claims that allows to study the validity of real-world claims by evaluating their truthfulness against scientific articles. Using a three-step data creation method, we first retrieved real-world claims from snippets returned by a search engine for questions about COVID-19. Then we automatically retrieved and re-ranked relevant scientific papers using a T5 relevance-based model. Finally, the relations between each evidence statement and the associated claim were manually annotated as SUPPORT, REFUTE and NEUTRAL. To validate the created dataset of 14,330 evidence-claim pairs, we developed baseline models based on pretrained language models. Our experiments showed that training deep learning models on real-world medical claims greatly improves performance compared to models trained on synthetic and open-domain claims. Our results and manual analysis suggest that HEALTHVER provides a realistic and challenging dataset for future efforts on evidence-based fact-checking of health-related claims. The dataset, source code, and a leaderboard are available at https://github.com/sarrouti/healthver.


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HOLMS: Alternative Summary Evaluation with Large Language Models
Yassine Mrabet | Dina Demner-Fushman
Proceedings of the 28th International Conference on Computational Linguistics

Efficient document summarization requires evaluation measures that can not only rank a set of systems based on an average score, but also highlight which individual summary is better than another. However, despite the very active research on summarization approaches, few works have proposed new evaluation measures in the recent years. The standard measures relied upon for the development of summarization systems are most often ROUGE and BLEU which, despite being efficient in overall system ranking, remain lexical in nature and have a limited potential when it comes to training neural networks. In this paper, we present a new hybrid evaluation measure for summarization, called HOLMS, that combines both language models pre-trained on large corpora and lexical similarity measures. Through several experiments, we show that HOLMS outperforms ROUGE and BLEU substantially in its correlation with human judgments on several extractive summarization datasets for both linguistic quality and pyramid scores.


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TextFlow: A Text Similarity Measure based on Continuous Sequences
Yassine Mrabet | Halil Kilicoglu | Dina Demner-Fushman
Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Text similarity measures are used in multiple tasks such as plagiarism detection, information ranking and recognition of paraphrases and textual entailment. While recent advances in deep learning highlighted the relevance of sequential models in natural language generation, existing similarity measures do not fully exploit the sequential nature of language. Examples of such similarity measures include n-grams and skip-grams overlap which rely on distinct slices of the input texts. In this paper we present a novel text similarity measure inspired from a common representation in DNA sequence alignment algorithms. The new measure, called TextFlow, represents input text pairs as continuous curves and uses both the actual position of the words and sequence matching to compute the similarity value. Our experiments on 8 different datasets show very encouraging results in paraphrase detection, textual entailment recognition and ranking relevance.


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Aligning Texts and Knowledge Bases with Semantic Sentence Simplification
Yassine Mrabet | Pavlos Vougiouklis | Halil Kilicoglu | Claire Gardent | Dina Demner-Fushman | Jonathon Hare | Elena Simperl
Proceedings of the 2nd International Workshop on Natural Language Generation and the Semantic Web (WebNLG 2016)

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The WebNLG Challenge: Generating Text from DBPedia Data
Emilie Colin | Claire Gardent | Yassine M’rabet | Shashi Narayan | Laura Perez-Beltrachini
Proceedings of the 9th International Natural Language Generation conference

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Annotating Named Entities in Consumer Health Questions
Halil Kilicoglu | Asma Ben Abacha | Yassine Mrabet | Kirk Roberts | Laritza Rodriguez | Sonya Shooshan | Dina Demner-Fushman
Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC'16)

We describe a corpus of consumer health questions annotated with named entities. The corpus consists of 1548 de-identified questions about diseases and drugs, written in English. We defined 15 broad categories of biomedical named entities for annotation. A pilot annotation phase in which a small portion of the corpus was double-annotated by four annotators was followed by a main phase in which double annotation was carried out by six annotators, and a reconciliation phase in which all annotations were reconciled by an expert. We conducted the annotation in two modes, manual and assisted, to assess the effect of automatic pre-annotation and calculated inter-annotator agreement. We obtained moderate inter-annotator agreement; assisted annotation yielded slightly better agreement and fewer missed annotations than manual annotation. Due to complex nature of biomedical entities, we paid particular attention to nested entities for which we obtained slightly lower inter-annotator agreement, confirming that annotating nested entities is somewhat more challenging. To our knowledge, the corpus is the first of its kind for consumer health text and is publicly available.


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LIST-LUX: Disorder Identification from Clinical Texts
Asma Ben Abacha | Aikaterini Karanasiou | Yassine Mrabet | Julio Cesar Dos Reis
Proceedings of the 9th International Workshop on Semantic Evaluation (SemEval 2015)