Yoshiki Vazquez Baeza
BLAR: Biomedical Local Acronym Resolver
William Hogan | Yoshiki Vazquez Baeza | Yannis Katsis | Tyler Baldwin | Ho-Cheol Kim | Chun-Nan Hsu
Proceedings of the 20th Workshop on Biomedical Language Processing
NLP has emerged as an essential tool to extract knowledge from the exponentially increasing volumes of biomedical texts. Many NLP tasks, such as named entity recognition and named entity normalization, are especially challenging in the biomedical domain partly because of the prolific use of acronyms. Long names for diseases, bacteria, and chemicals are often replaced by acronyms. We propose Biomedical Local Acronym Resolver (BLAR), a high-performing acronym resolver that leverages state-of-the-art (SOTA) pre-trained language models to accurately resolve local acronyms in biomedical texts. We test BLAR on the Ab3P corpus and achieve state-of-the-art results compared to the current best-performing local acronym resolution algorithms and models.