Unified multimodal models use a shared Transformer backbone for visual understanding and image generation. Existing post-training signals primarily constrain final outputs, output-side representations, or task-level behavior, providing limited supervision for how visual semantics are organized across intermediate layers. We propose HiSVR, a hierarchical semantic visual reconstruction method for post-training unified multimodal models. A frozen semantic visual tokenizer extracts residual semantic codes from each training image, which supervise image-associated hidden states at different Transformer depths. Shallow layers predict shorter semantic-code prefixes, while deeper layers reconstruct longer prefixes, yielding coarse-to-fine supervision over intermediate representations. To balance the differing optimization difficulty across depths and prefix lengths, we introduce an uncertainty-weighted progressive reconstruction loss. HiSVR is used only during training and removed at inference, preserving the original architecture and inference cost. Experiments on unified multimodal backbones show that HiSVR improves visual understanding while maintaining image generation quality. These results indicate that hierarchical semantic reconstruction effectively regularizes intermediate representations in unified multimodal models.

Scientific reasoning is a key aspect of human intelligence, requiring the integration of multimodal inputs, domain expertise, and multi-step inference across various subjects. Existing benchmarks for multimodal large language models (MLLMs) often fail to capture the complexity and traceability of reasoning processes necessary for rigorous evaluation. To fill this gap, we introduce SciVQR, a multimodal benchmark covering 54 subfields in mathematics, physics, chemistry, geography, astronomy, and biology. SciVQR includes domain-specific visuals, such as equations, charts, and diagrams, and challenges models to combine visual comprehension with reasoning. The tasks range from basic factual recall to complex, multi-step inferences, with 46% including expert-authored solutions. SciVQR not only evaluates final answers but also examines the reasoning process, providing insights into how models reach their conclusions. Our evaluation of leading MLLMs, including both proprietary and open-source models, reveals significant limitations in handling complex multimodal reasoning tasks, underscoring the need for improved multi-step reasoning and better integration of interdisciplinary knowledge in advancing MLLMs toward true scientific intelligence. The dataset and evaluation code are publicly available at https://github.com/CASIA-IVA-Lab/SciVQR.

We present M³-VQA, a novel knowledge-based Visual Question Answering (VQA) benchmark, to enhance the evaluation of multimodal large language models (MLLMs) in fine-grained multimodal entity understanding and complex multi-hop reasoning. Unlike existing VQA datasets that focus on coarse-grained categories and simple reasoning over single entities, M³-VQA introduces diverse multi-entity questions involving multiple distinct entities from both visual and textual sources. It requires models to perform both sequential and parallel multi-hop reasoning across multiple documents, supported by traceable, detailed evidence and a curated multimodal knowledge base. We evaluate 16 leading MLLMs under three settings: without external knowledge, with gold evidence, and with retrieval-augmented input. The poor results reveal significant challenges for MLLMs in knowledge acquisition and reasoning. Models perform poorly without external information but improve markedly when provided with precise evidence. Furthermore, reasoning-aware agentic retrieval surpasses heuristic methods, highlighting the importance of structured reasoning for complex multimodal understanding. M³-VQA presents a more challenging evaluation for advancing the multimodal reasoning capabilities of MLLMs. Our code and dataset are available at https://github.com/CASIA-IVA-Lab/M3VQA.