The impressive capabilities of large language models (LLMs) have attracted extensive interests of applying LLMs to medical field. However, the complex nature of clinical environments presents significant hallucination challenges for LLMs, hindering their widespread adoption. In this paper, we address these hallucination issues in the context of Medical Information Extraction (MIE) tasks by introducing ALternate Contrastive Decoding (ALCD). We begin by redefining MIE tasks as an identify-and-classify process. We then separate the identification and classification functions of LLMs by selectively masking the optimization of tokens during fine-tuning. During the inference stage, we alternately contrast output distributions derived from sub-task models. This approach aims to selectively enhance the identification and classification capabilities while minimizing the influence of other inherent abilities in LLMs. Additionally, we propose an alternate adaptive constraint strategy to more effectively adjust the scale and scope of contrastive tokens. Through comprehensive experiments on two different backbones and six diverse medical information extraction tasks, ALCD demonstrates significant improvements in resolving hallucination issues compared to conventional decoding methods.

Although biomedical entity linking (BioEL) has made significant progress with pre-trained language models, challenges still exist for fine-grained and long-tailed entities. To address these challenges, we present BioELQA, a novel model that treats Biomedical Entity Linking as Multiple Choice Question Answering. BioELQA first obtains candidate entities with a fast retriever, jointly presents the mention and candidate entities to a generator, and then outputs the predicted symbol associated with its chosen entity. This formulation enables explicit comparison of different candidate entities, thus capturing fine-grained interactions between mentions and entities, as well as among entities themselves. To improve generalization for long-tailed entities, we retrieve similar labeled training instances as clues and concatenate the input with retrieved instances for the generator. Extensive experimental results show that BioELQA outperforms state-of-the-art baselines on several datasets.

Knowledge graph completion (KGC) is a widely used method to tackle incompleteness in knowledge graphs (KGs) by making predictions for missing links. Description-based KGC leverages pre-trained language models to learn entity and relation representations with their names or descriptions, which shows promising results. However, the performance of description-based KGC is still limited by the quality of text and the incomplete structure, as it lacks sufficient entity descriptions and relies solely on relation names, leading to sub-optimal results. To address this issue, we propose MPIKGC, a general framework to compensate for the deficiency of contextualized knowledge and improve KGC by querying large language models (LLMs) from various perspectives, which involves leveraging the reasoning, explanation, and summarization capabilities of LLMs to expand entity descriptions, understand relations, and extract structures, respectively. We conducted extensive evaluation of the effectiveness and improvement of our framework based on four description-based KGC models, for both link prediction and triplet classification tasks. All codes and generated data will be publicly available after review.

Knowledge graph (KG) embedding is a fundamental task in natural language processing, and various methods have been proposed to explore semantic patterns in distinctive ways. In this paper, we propose to learn an ensemble by leveraging existing methods in a relation-aware manner. However, exploring these semantics using relation-aware ensemble leads to a much larger search space than general ensemble methods. To address this issue, we propose a divide-search-combine algorithm RelEns-DSC that searches the relation-wise ensemble weights independently. This algorithm has the same computation cost as general ensemble methods but with much better performance. Experimental results on benchmark datasets demonstrate the effectiveness of the proposed method in efficiently searching relation-aware ensemble weights and achieving state-of-the-art embedding performance. The code is public at https://github.com/LARS-research/RelEns.

Multi-modal entity alignment aims to identify equivalent entities between two different multi-modal knowledge graphs, which consist of structural triples and images associated with entities. Most previous works focus on how to utilize and encode information from different modalities, while it is not trivial to leverage multi-modal knowledge in entity alignment because of the modality heterogeneity. In this paper, we propose MCLEA, a Multi-modal Contrastive Learning based Entity Alignment model, to obtain effective joint representations for multi-modal entity alignment. Different from previous works, MCLEA considers task-oriented modality and models the inter-modal relationships for each entity representation. In particular, MCLEA firstly learns multiple individual representations from multiple modalities, and then performs contrastive learning to jointly model intra-modal and inter-modal interactions. Extensive experimental results show that MCLEA outperforms state-of-the-art baselines on public datasets under both supervised and unsupervised settings.

Hierarchical text classification is an important yet challenging task due to the complex structure of the label hierarchy. Existing methods ignore the semantic relationship between text and labels, so they cannot make full use of the hierarchical information. To this end, we formulate the text-label semantics relationship as a semantic matching problem and thus propose a hierarchy-aware label semantics matching network (HiMatch). First, we project text semantics and label semantics into a joint embedding space. We then introduce a joint embedding loss and a matching learning loss to model the matching relationship between the text semantics and the label semantics. Our model captures the text-label semantics matching relationship among coarse-grained labels and fine-grained labels in a hierarchy-aware manner. The experimental results on various benchmark datasets verify that our model achieves state-of-the-art results.

Sequential sentence classification aims to classify each sentence in the document based on the context in which sentences appear. Most existing work addresses this problem using a hierarchical sequence labeling network. However, they ignore considering the latent segment structure of the document, in which contiguous sentences often have coherent semantics. In this paper, we proposed a span-based dynamic local attention model that could explicitly capture the structural information by the proposed supervised dynamic local attention. We further introduce an auxiliary task called span-based classification to explore the span-level representations. Extensive experiments show that our model achieves better or competitive performance against state-of-the-art baselines on two benchmark datasets.

Metaphors are ubiquitous in natural language, and detecting them requires contextual reasoning about whether a semantic incongruence actually exists. Most existing work addresses this problem using pre-trained contextualized models. Despite their success, these models require a large amount of labeled data and are not linguistically-based. In this paper, we proposed a ContrAstive pre-Trained modEl (CATE) for metaphor detection with semi-supervised learning. Our model first uses a pre-trained model to obtain a contextual representation of target words and employs a contrastive objective to promote an increased distance between target words’ literal and metaphorical senses based on linguistic theories. Furthermore, we propose a simple strategy to collect large-scale candidate instances from the general corpus and generalize the model via self-training. Extensive experiments show that CATE achieves better performance against state-of-the-art baselines on several benchmark datasets.

The central problem of sentence classification is to extract multi-scale n-gram features for understanding the semantic meaning of sentences. Most existing models tackle this problem by stacking CNN and RNN models, which easily leads to feature redundancy and overfitting because of relatively limited datasets. In this paper, we propose a simple yet effective model called Multi-scale Orthogonal inDependEnt LSTM (MODE-LSTM), which not only has effective parameters and good generalization ability, but also considers multiscale n-gram features. We disentangle the hidden state of the LSTM into several independently updated small hidden states and apply an orthogonal constraint on their recurrent matrices. We then equip this structure with sliding windows of different sizes for extracting multi-scale n-gram features. Extensive experiments demonstrate that our model achieves better or competitive performance against state-of-the-art baselines on eight benchmark datasets. We also combine our model with BERT to further boost the generalization performance.