Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
2020-07
Association for Computational Linguistics
Online
text
conference publication
bionlp-2020-sigbiomed
https://aclanthology.org/2020.bionlp-1.0
Quantifying 60 Years of Gender Bias in Biomedical Research with Word Embeddings
Anthony
Rios
author
Reenam
Joshi
author
Hejin
Shin
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
rios-etal-2020-quantifying
10.18653/v1/2020.bionlp-1.1
https://aclanthology.org/2020.bionlp-1.1
2020-07
1
13
Sequence-to-Set Semantic Tagging for Complex Query Reformulation and Automated Text Categorization in Biomedical IR using Self-Attention
Manirupa
Das
author
Juanxi
Li
author
Eric
Fosler-Lussier
author
Simon
Lin
author
Steve
Rust
author
Yungui
Huang
author
Rajiv
Ramnath
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
das-etal-2020-sequence
10.18653/v1/2020.bionlp-1.2
https://aclanthology.org/2020.bionlp-1.2
2020-07
14
27
Interactive Extractive Search over Biomedical Corpora
Hillel
Taub Tabib
author
Micah
Shlain
author
Shoval
Sadde
author
Dan
Lahav
author
Matan
Eyal
author
Yaara
Cohen
author
Yoav
Goldberg
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
taub-tabib-etal-2020-interactive
10.18653/v1/2020.bionlp-1.3
https://aclanthology.org/2020.bionlp-1.3
2020-07
28
37
Improving Biomedical Analogical Retrieval with Embedding of Structural Dependencies
Amandalynne
Paullada
author
Bethany
Percha
author
Trevor
Cohen
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
paullada-etal-2020-improving
10.18653/v1/2020.bionlp-1.4
https://aclanthology.org/2020.bionlp-1.4
2020-07
38
48
DeSpin: a prototype system for detecting spin in biomedical publications
Anna
Koroleva
author
Sanjay
Kamath
author
Patrick
Bossuyt
author
Patrick
Paroubek
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
koroleva-etal-2020-despin
10.18653/v1/2020.bionlp-1.5
https://aclanthology.org/2020.bionlp-1.5
2020-07
49
59
Towards Visual Dialog for Radiology
Olga
Kovaleva
author
Chaitanya
Shivade
author
Satyananda
Kashyap
author
Karina
Kanjaria
author
Joy
Wu
author
Deddeh
Ballah
author
Adam
Coy
author
Alexandros
Karargyris
author
Yufan
Guo
author
David
Beymer
Beymer
author
Anna
Rumshisky
author
Vandana
Mukherjee
Mukherjee
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
kovaleva-etal-2020-towards
10.18653/v1/2020.bionlp-1.6
https://aclanthology.org/2020.bionlp-1.6
2020-07
60
69
A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction
Chen
Lin
author
Timothy
Miller
author
Dmitriy
Dligach
author
Farig
Sadeque
author
Steven
Bethard
author
Guergana
Savova
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
lin-etal-2020-bert
10.18653/v1/2020.bionlp-1.7
https://aclanthology.org/2020.bionlp-1.7
2020-07
70
75
Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset
Thomas
Searle
author
Zina
Ibrahim
author
Richard
Dobson
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
searle-etal-2020-experimental
10.18653/v1/2020.bionlp-1.8
https://aclanthology.org/2020.bionlp-1.8
2020-07
76
85
Comparative Analysis of Text Classification Approaches in Electronic Health Records
Aurelie
Mascio
author
Zeljko
Kraljevic
author
Daniel
Bean
author
Richard
Dobson
author
Robert
Stewart
author
Rebecca
Bendayan
author
Angus
Roberts
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
mascio-etal-2020-comparative
10.18653/v1/2020.bionlp-1.9
https://aclanthology.org/2020.bionlp-1.9
2020-07
86
94
Noise Pollution in Hospital Readmission Prediction: Long Document Classification with Reinforcement Learning
Liyan
Xu
author
Julien
Hogan
author
Rachel
E
Patzer
author
Jinho
D
Choi
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
xu-etal-2020-noise
10.18653/v1/2020.bionlp-1.10
https://aclanthology.org/2020.bionlp-1.10
2020-07
95
104
Evaluating the Utility of Model Configurations and Data Augmentation on Clinical Semantic Textual Similarity
Yuxia
Wang
author
Fei
Liu
author
Karin
Verspoor
author
Timothy
Baldwin
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
wang-etal-2020-evaluating
10.18653/v1/2020.bionlp-1.11
https://aclanthology.org/2020.bionlp-1.11
2020-07
105
111
Entity-Enriched Neural Models for Clinical Question Answering
Bhanu
Pratap
Singh
Rawat
author
Wei-Hung
Weng
author
So
Yeon
Min
author
Preethi
Raghavan
author
Peter
Szolovits
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
rawat-etal-2020-entity
10.18653/v1/2020.bionlp-1.12
https://aclanthology.org/2020.bionlp-1.12
2020-07
112
122
Evidence Inference 2.0: More Data, Better Models
Jay
DeYoung
author
Eric
Lehman
author
Benjamin
Nye
author
Iain
Marshall
author
Byron
C
Wallace
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
deyoung-etal-2020-evidence
10.18653/v1/2020.bionlp-1.13
https://aclanthology.org/2020.bionlp-1.13
2020-07
123
132
Personalized Early Stage Alzheimer’s Disease Detection: A Case Study of President Reagan’s Speeches
Ning
Wang
author
Fan
Luo
author
Vishal
Peddagangireddy
author
Koduvayur
Subbalakshmi
author
Rajarathnam
Chandramouli
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
wang-etal-2020-personalized
10.18653/v1/2020.bionlp-1.14
https://aclanthology.org/2020.bionlp-1.14
2020-07
133
139
BioMRC: A Dataset for Biomedical Machine Reading Comprehension
Dimitris
Pappas
author
Petros
Stavropoulos
author
Ion
Androutsopoulos
author
Ryan
McDonald
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
pappas-etal-2020-biomrc
10.18653/v1/2020.bionlp-1.15
https://aclanthology.org/2020.bionlp-1.15
2020-07
140
149
Neural Transduction of Letter Position Dyslexia using an Anagram Matrix Representation
Avi
Bleiweiss
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
bleiweiss-2020-neural
10.18653/v1/2020.bionlp-1.16
https://aclanthology.org/2020.bionlp-1.16
2020-07
150
155
Domain Adaptation and Instance Selection for Disease Syndrome Classification over Veterinary Clinical Notes
Brian
Hur
author
Timothy
Baldwin
author
Karin
Verspoor
author
Laura
Hardefeldt
author
James
Gilkerson
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
hur-etal-2020-domain
10.18653/v1/2020.bionlp-1.17
https://aclanthology.org/2020.bionlp-1.17
2020-07
156
166
Benchmark and Best Practices for Biomedical Knowledge Graph Embeddings
David
Chang
author
Ivana
Balažević
author
Carl
Allen
author
Daniel
Chawla
author
Cynthia
Brandt
author
Andrew
Taylor
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
chang-etal-2020-benchmark
10.18653/v1/2020.bionlp-1.18
https://aclanthology.org/2020.bionlp-1.18
2020-07
167
176
Extensive Error Analysis and a Learning-Based Evaluation of Medical Entity Recognition Systems to Approximate User Experience
Isar
Nejadgholi
author
Kathleen
C
Fraser
author
Berry
de Bruijn
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
nejadgholi-etal-2020-extensive
10.18653/v1/2020.bionlp-1.19
https://aclanthology.org/2020.bionlp-1.19
2020-07
177
186
A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction
Saadullah
Amin
author
Katherine
Ann
Dunfield
author
Anna
Vechkaeva
author
Guenter
Neumann
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
amin-etal-2020-data
10.18653/v1/2020.bionlp-1.20
https://aclanthology.org/2020.bionlp-1.20
2020-07
187
194
Global Locality in Biomedical Relation and Event Extraction
Elaheh
ShafieiBavani
author
Antonio
Jimeno Yepes
author
Xu
Zhong
author
David
Martinez Iraola
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
shafieibavani-etal-2020-global
10.18653/v1/2020.bionlp-1.21
https://aclanthology.org/2020.bionlp-1.21
2020-07
195
204
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining
Yifan
Peng
author
Qingyu
Chen
author
Zhiyong
Lu
author
2020-07
text
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing
Dina
Demner-Fushman
editor
Kevin
Bretonnel
Cohen
editor
Sophia
Ananiadou
editor
Junichi
Tsujii
editor
Association for Computational Linguistics
Online
conference publication
peng-etal-2020-empirical
10.18653/v1/2020.bionlp-1.22
https://aclanthology.org/2020.bionlp-1.22
2020-07
205
214